GAP Illumina short read, Reference genomes, 79638, Not applicable
Dataset size is: 61.00 GiB
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Sequence Data Type | illumina-shortread |
| analysissoftwareversion | Illumina RTA v3.4.4, Illumina bcl2fastq v2.20.0.422 |
| bait_set_name | Not applicable |
| bait_set_reference | Not applicable |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/genomics-illumina-shortread/BPAOPS-828/ |
| ccg_jira_ticket | BPAOPS-828 |
| data_type | Pilot |
| dataset_id | 83641 |
| date_of_transfer | 28/06/2019 |
| date_of_transfer_to_archive | 10/07/2019 |
| description | Illumina Short Read |
| dna_extract | No |
| dna_extract_pressed_sheet | No |
| download | https://data.bioplatforms.com/dataset/bpa-gap-illumina-shortread-79638 |
| facility | AGRF |
| family | Fabaceae |
| flow_cell_id | HLCH5DSXX |
| folder_name | 20190628_GAP_AGRF_HLCH5DSXX |
| genomic_material_associated_references | Acacia DNA extraction protocol on GAP website |
| genomic_material_preparation_date | 2019-05-01 |
| genomic_material_preparation_materials | STE:CTAB/chloroform; isopropanol :NaAC precipitation |
| genomic_material_preparation_process | STE:CTAB/chloroform; isopropanol :NaAC precipitation |
| genomic_material_preparation_type | gDNA |
| genomic_material_prepared_by | Todd McLay |
| herbarium_code | CANB |
| library_construction_protocol | TruSeq Nano DNA |
| library_id | 81644 |
| living_collections_catalog_number | CANB 748486 |
| living_collections_event_date | 2019-05-01 |
| living_collections_material_sample_rna | Not applicable |
| living_collections_record_number | TM304 |
| living_collections_recorded_by | Todd McLay |
| location_notes | No |
| nagoya_protocol_compliance | Yes |
| nagoya_protocol_permit_number | DNP Reference 2018/19-8 |
| population_group | Not applicable |
| preservation_date_begin | 2019-05-01 |
| preservation_temperature | 4 °C, ambient |
| preservation_type | Silica, frozen |
| project_aim | Reference genomes |
| sample_id | 102.100.100/79638 |
| sample_submission_date | 2019-05-17 |
| sample_submitter_email | Daniel.Murphy@rbg.vic.gov.au |
| sample_submitter_name | Daniel Murphy | Acacia Genome Consortium |
| scientific_name | Acacia pycnantha |
| scientific_name_authorship | Benth. |
| sequencer | NovaSeq 6000 |
| silica_gel | Not applicable |
| silica_gel_id | Not applicable |
| silica_gel_pressed_sheet | No |
| ticket | BPAOPS-828 |
| voucher_herbarium_catalog_number | CANB 748486 |
| voucher_herbarium_collector_id | S.R. Donaldson |
| voucher_herbarium_event_date | 2007-10-12 |
| voucher_herbarium_record_number | S.R. Donaldson 3550 |
| voucher_herbarium_recorded_by | S.R. Donaldson |