GAP Illumina short read, Phylogenomics, 79684, Duplicate - Angiosperms353 bait kit

Eremophila glabra Paynes Find - not sure what Paynes Find refers to? (R. Br.) Ostenf., Scrophulariaceae, Bayly Systematics Lab | The University of Melbroune

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Data and Resources

Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Resource Permissions organization_member
Sequence Data Type illumina-shortread
analysissoftwareversion Illumina RTA v2.11.3, Illumina bcl2fastq v2.20.0.422
bait_set_name Duplicate - Angiosperms353 bait kit
bait_set_reference 10.1093/sysbio/syy086
base_url https://downloads-qcif.bioplatforms.com/bpa/plants_staging/genomics-illumina-shortread/BPAOPS-932/
ccg_jira_ticket BPAOPS-932
data_type Pilot
dataset_id 83650
date_of_transfer 25/06/2020
date_of_transfer_to_archive 08/07/2020
description Illumina Short Read
dna_extract Yes
dna_extract_pressed_sheet Silica gel
download https://data.bioplatforms.com/organization/bpa-plants?q=ticket%3ABPAOPS-932&sort=score+desc%2C+metadata_modified+desc
facility AGRF
family Scrophulariaceae
flow_cell_id H7LV7AFX2
folder_name 20200625_GAP_AGRF_H7LV7AFX2 (Angio353 duplicate - except Korjent data)
genomic_material_associated_references Nil
genomic_material_preparation_date 2016-03-03
genomic_material_preparation_materials CTAB, custom library preparation protocol, custom adapters/barcodes
genomic_material_preparation_process CTAB DNA extraction, mechanical DNA shearing, custom adapter ligation, custom barcode ligation
genomic_material_preparation_type gDNA, whole genome shotgun sequencing
genomic_material_prepared_by Rachael Fowler | The University of Melbourne
herbarium_code MELU
id_vetting_by Rachael Fowler | The University of Melbourne
library_construction_protocol CTAB DNA extraction, mechanical DNA shearing, custom adapter ligation, custom barcode ligation, Duplicate - Angiosperms353 MyBaits
library_id 81754
living_collections_catalog_number Not applicable
living_collections_record_number Not applicable
living_collections_recorded_by Not applicable
nagoya_protocol_compliance Yes
nagoya_protocol_permit_number CE004550, SW015904
project_aim Phylogenomics
sample_id 102.100.100/79684
sample_submitter_email rachael.fowler@unimelb.edu.au
sample_submitter_name Bayly Systematics Lab | The University of Melbroune
scientific_name Eremophila glabra Paynes Find - not sure what Paynes Find refers to?
scientific_name_authorship (R. Br.) Ostenf.
sequencer NextSeq 500
silica_gel Yes
silica_gel_pressed_sheet pressed sheet
ticket BPAOPS-932
voucher_herbarium_catalog_number MELUD119247a
voucher_herbarium_collector_id RF
voucher_herbarium_event_date 2014-07-05
voucher_herbarium_record_number RMF53
voucher_herbarium_recorded_by Rachael Fowler