GAP Illumina short read, Phylogenomics, 79700, Angiosperms353 bait kit

Astelia alpina var. alpina R.Br., Asteliaceae, Bee Gunn | Joanne L. Birch

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Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:365:gap-consortium-members
Access Control Date 2021-06-25
Access Control Mode date
Sequence Data Type illumina-shortread
analysissoftwareversion Illumina RTA v2.11.3, Illumina bcl2fastq v2.20.0.422
bait_set_name Angiosperms353 bait kit
bait_set_reference 10.1093/sysbio/syy086
base_url https://downloads-qcif.bioplatforms.com/bpa/plants_staging/genomics-illumina-shortread/BPAOPS-931/
ccg_jira_ticket BPAOPS-931
data_type Pilot
dataset_id 83650
date_of_transfer 2020-06-25
date_of_transfer_to_archive 2020-07-08
description Illumina Short Read
dna_extract Yes
dna_extract_pressed_sheet no
download https://data.bioplatforms.com/organization/bpa-plants?q=ticket%3ABPAOPS-931&sort=score+desc%2C+metadata_modified+desc
facility AGRF
family Asteliaceae
flow_cell_id HF7CKAFX2
folder_name 20200625_GAP_AGRF_HF7CKAFX2 (Angio353 - except Korjent data)
genomic_material_associated_references Nil
genomic_material_preparation_date 2017-07-13
genomic_material_preparation_materials Qiagen DNeasy Plant Mini Kit, custom library preparation protocol, custom adapters/barcodes
genomic_material_preparation_process QIAGEN DNA extraction, mechanical DNA shearing, custom adapter ligation, custom barcode ligation
genomic_material_preparation_type gDNA, whole genome shotgun sequencing
genomic_material_prepared_by Bee Gunn | Royal Botanic Garden Melbourne
herbarium_code MEL
id_vetting_by Dr Joanne L. Birch
library_construction_protocol QIAGEN DNA extraction, mechanical DNA shearing, custom adapter ligation, custom barcode ligation, Angio353 MyBaits
library_id 81770
living_collections_recorded_by not applicable
metadata_revision_date 2025-10-14
metadata_revision_filename 2025-10-15_Combined_plant_sample_metadata_forQCIF.xlsx
nagoya_protocol_compliance Pre-Nagoya
project_aim Phylogenomics
sample_id 102.100.100/79700
sample_submitter_email bee.gunn@rbg.vic.gov.au | joanne.birch@unimelb.edu.au
sample_submitter_name Bee Gunn | Joanne L. Birch
scientific_name Astelia alpina var. alpina
scientific_name_authorship R.Br.
sequencer NextSeq 500
silica_gel Yes
silica_gel_pressed_sheet no
ticket BPAOPS-931
voucher_herbarium_catalog_number MEL 2388934A
voucher_herbarium_collector_id Birch, J.L.
voucher_herbarium_event_date 2009-01-13
voucher_herbarium_record_number 390
voucher_herbarium_recorded_by Bee Gunn