GAP Illumina short read, Phylogenomics, 79722, Angiosperms353 bait kit

Delarbrea michieana (F.Muell.) F.Muell., Myodocarpaceae, Trevor Wilson | National Herbarium of New South Wales

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Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:365:gap-consortium-members
Access Control Date 2021-06-25
Access Control Mode date
Sequence Data Type illumina-shortread
analysissoftwareversion Illumina RTA v2.11.3, Illumina bcl2fastq v2.20.0.422
bait_set_name Angiosperms353 bait kit
bait_set_reference 10.1093/sysbio/syy086
base_url https://downloads-qcif.bioplatforms.com/bpa/plants_staging/genomics-illumina-shortread/BPAOPS-931/
ccg_jira_ticket BPAOPS-931
data_type Pilot
dataset_id 83650
date_of_transfer 2020-06-25
date_of_transfer_to_archive 2020-07-08
description Illumina Short Read
dna_extract Yes
dna_extract_pressed_sheet Yes
download https://data.bioplatforms.com/organization/bpa-plants?q=ticket%3ABPAOPS-931&sort=score+desc%2C+metadata_modified+desc
facility AGRF
family Myodocarpaceae
flow_cell_id HF7CKAFX2
folder_name 20200625_GAP_AGRF_HF7CKAFX2 (Angio353 - except Korjent data)
genomic_material_associated_references Nil
genomic_material_preparation_date 2017-11-10
genomic_material_preparation_materials CTAB, custom library preparation protocol, custom adapters/barcodes
genomic_material_preparation_process CTAB DNA extraction, mechanical DNA shearing, custom adapter ligation, custom barcode ligation
genomic_material_preparation_type gDNA, whole genome shotgun sequencing
genomic_material_prepared_by Trevor C Wilson | The University of Melbourne
herbarium_code NSW
id_vetting_by M.J. Henwood | R. Dimon | The University of Sydney
library_construction_protocol CTAB DNA extraction, mechanical DNA shearing, custom adapter ligation, custom barcode ligation, Angio353 MyBaits
library_id 81816
living_collections_catalog_number not applicable
living_collections_record_number not applicable
living_collections_recorded_by not applicable
metadata_revision_date 2025-10-14
metadata_revision_filename 2025-10-15_Combined_plant_sample_metadata_forQCIF.xlsx
nagoya_protocol_compliance Pre-Nagoya
preservation_date_begin 1988-08-26
preservation_temperature Room temperature
preservation_type Herbarium specimen
project_aim Phylogenomics
sample_id 102.100.100/79722
sample_submitter_email trevor.c.wilson@rbgsyd.nsw.gov.au
sample_submitter_name Trevor Wilson | National Herbarium of New South Wales
scientific_name Delarbrea michieana
scientific_name_authorship (F.Muell.) F.Muell.
sequencer NextSeq 500
silica_gel no
silica_gel_pressed_sheet Yes
ticket BPAOPS-931
voucher_herbarium_catalog_number NSW210140
voucher_herbarium_collector_id P. Hind
voucher_herbarium_event_date 1988-08-26
voucher_herbarium_record_number P. Hind 5670
voucher_herbarium_recorded_by P. Hind | National Herbarium of NSW