GAP Illumina short read, Phylogenomics, 79723, Angiosperms353 bait kit

Coleus graveolens (R.Br.) A.J.Paton, Lamiaceae, Trevor Wilson | National Herbarium of New South Wales

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Data and Resources

Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Resource Permissions organization_member
Sequence Data Type illumina-shortread
analysissoftwareversion Illumina RTA v2.11.3, Illumina bcl2fastq v2.20.0.422
bait_set_name Angiosperms353 bait kit
bait_set_reference 10.1093/sysbio/syy086
base_url https://downloads-qcif.bioplatforms.com/bpa/plants_staging/genomics-illumina-shortread/BPAOPS-931/
ccg_jira_ticket BPAOPS-931
data_type Pilot
dataset_id 83650
date_of_transfer 25/06/2020
date_of_transfer_to_archive 08/07/2020
description Illumina Short Read
dna_extract Yes
dna_extract_pressed_sheet No
download https://data.bioplatforms.com/organization/bpa-plants?q=ticket%3ABPAOPS-931&sort=score+desc%2C+metadata_modified+desc
facility AGRF
family Lamiaceae
flow_cell_id HF7CKAFX2
folder_name 20200625_GAP_AGRF_HF7CKAFX2 (Angio353 - except Korjent data)
genomic_material_associated_references Nil
genomic_material_preparation_date 2017-02-01
genomic_material_preparation_materials CTAB, custom library preparation protocol, custom adapters/barcodes
genomic_material_preparation_process CTAB DNA extraction, mechanical DNA shearing, custom adapter ligation, custom barcode ligation
genomic_material_preparation_type gDNA, whole genome shotgun sequencing
genomic_material_prepared_by Trevor C Wilson | The University of Melbourne
herbarium_code NSW
id_vetting_by T. C. Wilson | M.A.M. Renner | National Herbaruim of NSW
library_construction_protocol CTAB DNA extraction, mechanical DNA shearing, custom adapter ligation, custom barcode ligation, Angio353 MyBaits
library_id 81817
living_collections_catalog_number Not applicable
living_collections_record_number Not applicable
living_collections_recorded_by Not applicable
nagoya_protocol_compliance Yes
nagoya_protocol_permit_number Scientific Licence SL 100569 issued under Part 2 of the BIODIVERSITY CONSERVATION ACT 2016
preservation_date_begin 2017-10-24
preservation_temperature −20 °C
preservation_type Tissue, Freezing
project_aim Phylogenomics
sample_id 102.100.100/79723
sample_submitter_email trevor.c.wilson@rbgsyd.nsw.gov.au
sample_submitter_name Trevor Wilson | National Herbarium of New South Wales
scientific_name Coleus graveolens
scientific_name_authorship (R.Br.) A.J.Paton
sequencer NextSeq 500
silica_gel Yes
silica_gel_pressed_sheet No
ticket BPAOPS-931
voucher_herbarium_catalog_number NSW995907/NSW939047
voucher_herbarium_collector_id T.C. Wilson
voucher_herbarium_event_date 2017-10-24
voucher_herbarium_record_number T.C. Wilson 667
voucher_herbarium_recorded_by T.C. Wilson | National Herbarium of NSW