GAP Illumina short read, Phylogenomics, 79746, Duplicate - Angiosperms353 bait kit

Alpinia caerulea (R.Br.) Benth., Zingiberaceae, Kor-jent van Dijk | Michelle Waycott | University of Adelaide

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Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:365:gap-consortium-members
Access Control Date 2021-09-11
Access Control Mode date
Sequence Data Type illumina-shortread
analysissoftwareversion Illumina RTA v2.11.3, Illumina bcl2fastq v2.20.0.422
bait_set_name Duplicate - Angiosperms353 bait kit
bait_set_reference 10.1093/sysbio/syy086
base_url https://downloads-qcif.bioplatforms.com/bpa/plants_staging/genomics-illumina-shortread/BPAOPS-1064/20200909_GAP_AGRF_H7LV7AFX2/
ccg_jira_ticket BPAOPS-1064
data_type Pilot
dataset_id 83650
date_data_published 28/04/2021
date_of_transfer 2020-09-11
date_of_transfer_to_archive 2020-09-15
description Illumina Short Read
dna_extract Yes
dna_extract_pressed_sheet Yes
download https://data.bioplatforms.com/dataset?q=ticket%3ABPAOPS-1064
facility AGRF / Kor-jent van Dijk
family Zingiberaceae
flow_cell_id H7LV7AFX2
folder_name 20200909_GAP_AGRF_H7LV7AFX2 (Angio353 duplicate - Korjent data only)
genomic_material_associated_references Nil
genomic_material_preparation_date 2019-10-21
genomic_material_preparation_materials custom library preparation protocol, custom adapters/barcodes
genomic_material_preparation_process LGC sbeadex oKtopure
genomic_material_preparation_type gDNA, whole genome shotgun sequencing
genomic_material_prepared_by Kor-jent van Dijk
herbarium_code AD
library_construction_protocol LGC sbeadex oKtopure, Duplicate - Angiosperms353 MyBaits
library_id 81925
living_collections_catalog_number not applicable
living_collections_record_number not applicable
living_collections_recorded_by not applicable
metadata_revision_date 2025-10-14
metadata_revision_filename 2025-10-15_Combined_plant_sample_metadata_forQCIF.xlsx
nagoya_protocol_compliance Yes
nagoya_protocol_permit_number State Herbarium of South Australia collection permit
preservation_temperature -20°C
preservation_type DNA
project_aim Phylogenomics
sample_id 102.100.100/79746
sample_submitter_email korjent.vandijk@adelaide.edu.au
sample_submitter_name Kor-jent van Dijk | Michelle Waycott | University of Adelaide
scientific_name Alpinia caerulea
scientific_name_authorship (R.Br.) Benth.
sequencer NextSeq 500
silica_gel no
ticket BPAOPS-1064
voucher_herbarium_catalog_number G876230
voucher_herbarium_collector_id Ed Biffin
voucher_herbarium_record_number record number not recorded