GAP Illumina short read, Reference genomes, 79638, Not applicable
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Data and Resources
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Data Policy
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Sequence Data Type | illumina-shortread |
| analysissoftwareversion | Illumina RTA v3.4.4, Illumina bcl2fastq v2.20.0.422 |
| bait_set_name | Not applicable |
| bait_set_reference | Not applicable |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/genomics-illumina-shortread/BPAOPS-947/20200806_GAP_NGS_AGRF_HNMVTDRXX/ |
| ccg_jira_ticket | BPAOPS-947 |
| data_type | Pilot |
| dataset_id | 83652 |
| date_of_transfer | 06/08/2020 |
| date_of_transfer_to_archive | 11/08/2020 |
| description | Illumina Short Read |
| dna_extract | No |
| dna_extract_pressed_sheet | No |
| download | https://data.bioplatforms.com/dataset/bpa-gap-illumina-shortread-81996 |
| facility | AGRF |
| family | Fabaceae |
| flow_cell_id | HNMVTDRXX |
| folder_name | 20200806_GAP_NGS_AGRF_HNMVTDRXX |
| genomic_material_associated_references | Acacia RNA extraction protocol on GAP website |
| genomic_material_preparation_date | 2020-05-15 |
| genomic_material_preparation_materials | D-sorbitol buffer; 2-mercaptoethanol; Takara Fruit-Mate additive; Macherey & Nagel Plant and Fungi Kit; DNase I; NEB Monarch RNA purification kit. |
| genomic_material_preparation_process | D-sorbitol prewash with a modified Machery & Nagel Plant and Fungi kit protocol |
| genomic_material_preparation_type | Total RNA |
| genomic_material_prepared_by | Gareth Holmes |
| herbarium_code | CANB |
| library_construction_protocol | TruSeq Strandard mRNA |
| library_id | 81996 |
| living_collections_catalog_number | CANB 748486 |
| living_collections_event_date | 2019-05-01 |
| living_collections_material_sample_rna | Flowers |
| living_collections_record_number | TM304 |
| living_collections_recorded_by | Todd McLay |
| location_notes | No |
| nagoya_protocol_compliance | Yes |
| nagoya_protocol_permit_number | DNP Reference 2018/19-8 |
| population_group | Not applicable |
| preservation_date_begin | 2019-08-20 |
| preservation_temperature | - 20°C |
| preservation_type | RNAlater |
| project_aim | Reference genomes |
| sample_id | 102.100.100/79638 |
| sample_submission_date | 2020-05-15 |
| sample_submitter_email | Daniel.Murphy@rbg.vic.gov.au |
| sample_submitter_name | Daniel Murphy | Acacia Genome Consortium |
| scientific_name | Acacia pycnantha |
| scientific_name_authorship | Benth. |
| sequencer | NovaSeq 6000 |
| silica_gel | Not applicable |
| silica_gel_id | Not applicable |
| silica_gel_pressed_sheet | No |
| ticket | BPAOPS-947 |
| voucher_herbarium_catalog_number | CANB 748486 |
| voucher_herbarium_collector_id | S.R. Donaldson |
| voucher_herbarium_event_date | 2007-10-12 |
| voucher_herbarium_record_number | S.R. Donaldson 3550 |
| voucher_herbarium_recorded_by | S.R. Donaldson |