GAP Illumina short read, Phylogenomics, 79906, Angiosperms353 bait kit
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Data and Resources
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:gap-consortium-members |
| Access Control Date | 2022-04-13 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| analysissoftwareversion | NovaSeq Control Software (NCS) v1.7.0 and Real Time Analysis (RTA) v3.4.4, bcl2fastq 2.20.0.422 |
| bait_set_name | Angiosperms353 bait kit |
| bait_set_reference | 10.1093/sysbio/syy086 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/genomics-illumina-shortread/BPAOPS-1060/20210413_GAP_AGRF_H3GYVDSX2/ |
| ccg_jira_ticket | BPAOPS-1060 |
| data_type | Main dataset (AATOL Stage 1) |
| dataset_id | 83654 |
| date_data_published | 15/4/2021 |
| date_of_transfer | 2021-04-13 |
| date_of_transfer_to_archive | 2021-04-13 |
| description | Illumina Short Read |
| dna_extract | No - Plant Material sent to AGRF for DNA extraction |
| facility | AGRF |
| family | Orchidaceae |
| flow_cell_id | H3GYVDSX2 |
| folder_name | 20210413_GAP_NGS_AGRF_H3GYVDSX2 |
| genomic_material_preparation_process | Macherey-Nagel NucleoSpin Plant II Kit (single column) |
| genomic_material_preparation_type | gDNA |
| genomic_material_prepared_by | AGRF (Nov - Dec 2020) |
| herbarium_code | CANB |
| id_vetting_by | Mark Clements |
| id_vetting_date | 2020-05-20 |
| library_construction_protocol | NEBNext Ultra II DNA with MyBaits Angio353 Capture |
| library_id | 82097 |
| metadata_revision_date | 2025-10-14 |
| metadata_revision_filename | 2025-10-15_Combined_plant_sample_metadata_forQCIF.xlsx |
| nagoya_protocol_compliance | Pre-Nagoya |
| project_aim | Phylogenomics |
| run_format | 150PE |
| sample_id | 102.100.100/79906 |
| sample_submission_date | 2020-11-24 |
| sample_submitter_email | mark.clements@csiro.au |
| sample_submitter_name | Mark Clements |
| scientific_name | Apostasia stylidioides |
| scientific_name_authorship | (F.Muell.) Rchb.f. |
| sequencer | NovaSeq 6000 |
| ticket | BPAOPS-1060 |
| voucher_herbarium_catalog_number | CANB 676472 |
| voucher_herbarium_collector_id | A.M.Mackenzie |
| voucher_herbarium_event_date | 1998-09-15 |
| voucher_herbarium_record_number | 046/98 |