GAP Illumina short read, Phylogenomics, 80310, Angiosperms353 bait kit (Dataset 1)
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Data and Resources
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Sequence Data Type | illumina-shortread |
| analysissoftwareversion | NovaSeq Control Software (NCS) v1.7.0 and Real Time Analysis (RTA) v3.4.4, bcl2fastq 2.20.0.422 |
| bait_set_name | Angiosperms353 bait kit (Dataset 1) |
| bait_set_reference | 10.1093/sysbio/syy086 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/genomics-illumina-shortread/BPAOPS-983/20201116_GAP_AGRF_CAGRF20083581_HVM7GDRXX/ |
| ccg_jira_ticket | BPAOPS-983 |
| data_type | Main dataset |
| dataset_id | 83655 |
| date_of_transfer | 18/11/2020 |
| date_of_transfer_to_archive | 19/11/2020 |
| description | Illumina Short Read |
| dna_extract | No - Plant Material sent to AGRF for DNA extraction |
| facility | AGRF |
| family | Cyperaceae |
| flow_cell_id | HVM7GDRXX |
| folder_name | 20201116_GAP_AGRF_CAGRF20083581_HVM7GDRXX |
| genomic_material_preparation_process | Qiagen DNeasy 96 Plant Kit |
| genomic_material_preparation_type | gDNA |
| genomic_material_prepared_by | AGRF (Sep-Oct 2020) |
| herbarium_code | NE |
| id_vetting_by | J.J. Bruhl |
| id_vetting_date | 2020-08-19 |
| library_construction_protocol | NEBNext Ultra II DNA with MyBaits Angio353 Capture |
| library_id | 82501 |
| nagoya_protocol_compliance | pre nagoya |
| project_aim | Phylogenomics |
| run_format | 100PE |
| sample_id | 102.100.100/80310 |
| sample_submission_date | 2020-09-16 |
| sample_submitter_email | herve.sauquet@gmail.com |
| sample_submitter_name | Hervé Sauquet | NSW-NE |
| scientific_name | Ficinia nodosa |
| scientific_name_authorship | (Rottb.) Goetgh., Muasya & D.A.Simpson |
| sequencer | NovaSeq 6000 |
| silica_gel | Yes |
| silica_gel_id | NE86628 |
| ticket | BPAOPS-983 |
| voucher_herbarium_catalog_number | NE86628 |
| voucher_herbarium_collector_id | J.J. Bruhl |
| voucher_herbarium_event_date | 2005-12-29 |
| voucher_herbarium_record_number | J.J. Bruhl 2373 |
| voucher_herbarium_recorded_by | NE |