GAP Illumina short read, Phylogenomics, 80801, Angiosperms353 bait kit (Dataset 1)
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:gap-consortium-members |
| Access Control Date | 2021-11-18 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| analysissoftwareversion | NovaSeq Control Software (NCS) v1.7.0 and Real Time Analysis (RTA) v3.4.4, bcl2fastq 2.20.0.422 |
| bait_set_name | Angiosperms353 bait kit (Dataset 1) |
| bait_set_reference | 10.1093/sysbio/syy086 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/genomics-illumina-shortread/BPAOPS-984/20201116_GAP_AGRF_CAGRF20083582_HVM7GDRXX/ |
| ccg_jira_ticket | BPAOPS-984 |
| data_type | Main dataset (AATOL Stage 1) |
| dataset_id | 83653 |
| date_of_transfer | 2020-11-18 |
| date_of_transfer_to_archive | 2020-11-19 |
| description | Illumina Short Read |
| dna_extract | No - Plant Material sent to AGRF for DNA extraction |
| facility | AGRF |
| family | Poaceae |
| flow_cell_id | HVM7GDRXX |
| folder_name | 20201116_GAP_AGRF_CAGRF20083582_HVM7GDRXX |
| genomic_material_preparation_process | Qiagen DNeasy 96 Plant Kit |
| genomic_material_preparation_type | gDNA |
| genomic_material_prepared_by | AGRF (Aug-Sep 2020) |
| herbarium_code | AD |
| id_vetting_date | 2010-04-19 |
| library_construction_protocol | NEBNext Ultra II DNA with MyBaits Angio353 Capture |
| library_id | 82992 |
| metadata_revision_date | 2025-10-14 |
| metadata_revision_filename | 2025-10-15_Combined_plant_sample_metadata_forQCIF.xlsx |
| nagoya_protocol_compliance | Pre-Nagoya |
| nagoya_protocol_permit_number | not applicable |
| project_aim | Phylogenomics |
| run_format | 100PE |
| sample_id | 102.100.100/80801 |
| sample_submission_date | 2020-08-27 |
| sample_submitter_email | michelle.waycott@sa.gov.au |
| sample_submitter_name | Michelle Waycott |
| scientific_name | Polypogon tenellus |
| scientific_name_authorship | R.Br. |
| sequencer | NovaSeq 6000 |
| silica_gel | no |
| ticket | BPAOPS-984 |
| voucher_herbarium_catalog_number | AD 232291 |
| voucher_herbarium_collector_id | D.J. Duval | T.S. Te |
| voucher_herbarium_event_date | 2009-10-02 |
| voucher_herbarium_record_number | 1627 |
| voucher_herbarium_recorded_by | D.J. Duval | T.S. Te |