GAP PacBio-HiFi, Reference genomes, 378098
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Data Policy
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Access Control Date | 2023-09-16 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| analysis_software | SMRTtools |
| analysis_software_version | 11.0.0.146107 |
| bait_set_reference | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/pacbio-hifi/BPAOPS-1326/2022099_GAP_CAGRF220711209_DA193232/378098_GAP_AGRF_DA193232_HiFi_metadata/ |
| cell_postion | C01 |
| data_type | Main dataset |
| dataset_id | 102.100.100/83714 |
| dataset_url | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1326 |
| date_data_published | 20/9/22 |
| date_of_transfer | 2022-09-16 |
| date_of_transfer_to_archive | 2022-09-19 |
| description | PacBio-HiFi |
| dna_treatment | Shearing |
| facility | AGRF |
| facility_sample_id | 378098.0 |
| family | Winteraceae |
| flowcell_id | DA193232 |
| flowcell_type | SMRTcell 8M |
| folder_name | 2022099_GAP_CAGRF220711209_DA193232 |
| genomic_material_associated_references | Scalable high-molecular weight DNA extraction for long-read sequencing dx.doi.org/10.17504/protocols.io.bnjhmcj7 |
| genomic_material_preparation_date | 2022-06-01 |
| genomic_material_preparation_materials | In the protocol |
| genomic_material_preparation_process | Scalable high-molecular weight DNA extraction for long-read sequencing dx.doi.org/10.17504/protocols.io.bnjhmcj7 |
| genomic_material_preparation_type | Leaf gDNA |
| genomic_material_prepared_by | Tania Zhang | University of Melbourne |
| id_vetting_by | Not needed - came from commercial Australian nursery |
| insert_size_range | 10-20KB |
| library_comments | NA |
| library_construction_protocol | Preparing HiFi SMRTbell® Libraries using the SMRTbell Express Template Prep Kit 2.0 |
| library_id | 102.100.100/382899 |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 78.0 |
| library_prep_date | 2022-07-01 |
| library_prepared_by | TRENT PETERS |
| library_selection | RANDOM |
| library_source | GENOMIC |
| library_status | Library sequenced |
| library_strategy | Preparing HiFi SMRTbell® Libraries using the SMRTbell Express Template Prep Kit 2.0 |
| library_type | WGS |
| living_collections_material_sample_rna | Leaf |
| metadata_revision_date | 2023-09-14 |
| metadata_revision_filename | 2023-09-07_Combined_plant_sample_metadata_forQCIF.xlsx |
| movie_length | 30HRS |
| n_libraries_pooled | 1 |
| nagoya_protocol_compliance | Yes |
| nagoya_protocol_permit_number | Not needed - came from commercial Australian nursery |
| preservation_date_begin | 2021-02-01 |
| preservation_temperature | −80°C |
| preservation_type | Leaf, freezing |
| project_aim | Reference genomes |
| sample_id | 102.100.100/378098 |
| sample_submission_date | 2021-11-09 |
| sample_submitter_email | m.lewsey@latrobe.edu.au | alexandre.fournier@unimelb.edu.au |
| sample_submitter_name | Mathew Lewsey | Alexandre Fournier-Level |
| scientific_name | Tasmannia lanceolata |
| scientific_name_authorship | (Poir.) A.C.Sm. |
| sequencing_facility | AGRF |
| sequencing_model | PacBio Sequel II |
| sequencing_platform | PACBIO_SMRT |
| ticket | BPAOPS-1326 |