GAP PacBio-HiFi, Reference genomes, 378161
Dataset size is: 0.00 Bit
Data and Resources
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378161_GAP_GWA_DA256599.subreads.bam Metadata Only BAM
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378161_GAP_GWA_DA256599_ccs_stat... Metadata Only CSV
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378161_GAP_GWA_DA256599.ccs.bam Metadata Only BAM
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378161_GAP_GWA_DA256599-SeqQC.pdf Metadata Only PDF
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378161_GAP_GWA_DA256599-LibQC.xlsx Metadata Only XLSX
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378161_GAP_GWA_DA256599.pdf Metadata Only PDF
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Access Control Date | 2024-06-01 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| analysis_software | SMRT Link |
| analysis_software_version | 11.1.0.166339 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/pacbio-hifi/BPAOPS-1408/20230428_GAP_GWA_GWA-AJ-774_DA256599/ |
| cell_postion | A01 |
| country | Australia |
| data_type | Main dataset |
| dataset_id | 102.100.100/83792 |
| dataset_url | https://data.bioplatforms.com/dataset/?ext_search_by=&q=ticket%3ABPAOPS-1408 |
| date_data_published | 13/6/2023 |
| date_of_transfer | 2023-06-02 |
| date_of_transfer_to_archive | 2023-06-09 |
| description | PacBio-HiFi |
| dna_treatment | Shearing on Diagenode megaruptor-3, FFPE repair with NEB kit, Blue Pippin Size selection > 15kB before library preparation |
| facility | GWA |
| facility_sample_id | iLab ID GWA-AJ-774 DAMP RAW L249 PBS033 |
| family | Goodeniaceae |
| flowcell_id | DA256599 |
| flowcell_type | 8M SMRT cell |
| folder_name | 20230428_GAP_GWA_GWA-AJ-774_DA256599 |
| genomic_material_associated_references | Jones et al (2021) PLOS ONE https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0253830 |
| genomic_material_preparation_date | 2022-02-01 |
| genomic_material_preparation_materials | In the protocol |
| genomic_material_preparation_process | Jones et al (2021) PLOS ONE https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0253830 |
| genomic_material_preparation_type | Leaf gDNA |
| genomic_material_prepared_by | Ashley Jones |
| herbarium_code | MEL |
| id_vetting_by | Andre Messina |
| id_vetting_date | 2021-01-06 |
| insert_size_range | 21083.0 |
| library_construction_protocol | Preparing whole genome and metagenome libraries using SMRTbell® prep kit 3.0 PN 102-166-600 APR2022 |
| library_id | 102.100.100/383168 |
| library_layout | NA |
| library_location | GWA FRIDGE 7 |
| library_ng_ul | 128.5 |
| library_prep_date | 2023-04-20 |
| library_prepared_by | Ali Sadiq Cheema |
| library_selection | RANDOM |
| library_source | GENOMIC |
| library_status | Library Sequenced |
| library_strategy | Preparing whole genome and metagenome libraries using SMRTbell® prep kit 3.0 PN 102-166-600 APR2022 with custom steps |
| library_type | Long read Hi Fi library with custom steps |
| living_collections_catalog_number | RBGC 214104 |
| living_collections_event_date | 2021-01-09 |
| living_collections_material_sample_rna | N/A |
| living_collections_record_number | RBGC 214104 |
| living_collections_recorded_by | Gareth Holmes |
| location_id | Burrowa-Pine Mountain National Park |
| location_notes | Walking track to Pine Mountain, on N slopes of ridge c. 1.5 km W of Pine Mountain Summit |
| metadata_revision_date | 2023-09-14 |
| metadata_revision_filename | 2023-09-07_Combined_plant_sample_metadata_forQCIF.xlsx |
| movie_length | 30 hours |
| nagoya_protocol_compliance | Yes |
| nagoya_protocol_permit_number | 10008918.0 |
| preservation_date_begin | 2022-11-01 |
| preservation_temperature | Leaf −80°C (2022-11), DNA 4°C (2023-02) |
| preservation_type | Freezing, fridge |
| project_aim | Reference genomes |
| sample_id | 102.100.100/378161 |
| sample_submitter_email | David.Cantrill@rbg.vic.gov.au |
| sample_submitter_name | David Cantrill |
| scientific_name | Dampiera purpurea |
| scientific_name_authorship | R.Br. |
| sequencing_facility | Genomics WA |
| sequencing_model | PacBio Sequel II |
| sequencing_platform | PACBIO_SMRT |
| state_or_territory | Victoria |
| ticket | BPAOPS-1408 |
| voucher_herbarium_catalog_number | MEL 2525469A |
| voucher_herbarium_collector_id | A. Messina |
| voucher_herbarium_event_date | 2021-01-06 |
| voucher_herbarium_record_number | A. Messina 1874 |
| voucher_herbarium_recorded_by | A. Messina |