GAP PacBio-HiFi flow cell 2, Reference genomes, 376415
Dataset size is: 0.00 Bit
Data and Resources
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376415_GAP_GWA_DA256563.pdf Metadata Only PDF
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376415_GAP_GWA_DA256563.ccs.bam Metadata Only BAM
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376415_GAP_GWA_DA256563.subreads.bam Metadata Only BAM
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376415_GAP_GWA_DA256563-SeqQC.pdf Metadata Only PDF
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376415_GAP_GWA_DA256563-LibQC.xlsx Metadata Only XLSX
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376415_GAP_GWA_DA256563_ccs_stat... Metadata Only CSV
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Access Control Date | 2024-06-01 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| analysis_software | SMRT Link |
| analysis_software_version | 11.1.0.166339 |
| bait_set_reference | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/pacbio-hifi/BPAOPS-1411/20230502_GAP_GWA_GWA-AS-799_DA256563/ |
| cell_postion | D01 |
| country | Australia |
| data_type | Main dataset |
| dataset_id | 102.100.100/83801 |
| dataset_url | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1411 |
| date_data_published | 19/06/2023 |
| date_of_transfer | 2023-06-02 |
| date_of_transfer_to_archive | 2023-06-13 |
| description | PacBio-HiFi flow cell 2 |
| dna_treatment | Shearing on Diagenode megaruptor-3, FFPE repair with NEB kit, Blue Pippin Size selection > 15kB before library preparation |
| facility | GWA |
| facility_sample_id | iLab ID GWA-AS-799 376415 L264 PBS033 |
| family | Asteraceae |
| flowcell_id | DA256563 |
| flowcell_type | 8M SMRT cell |
| folder_name | 20230502_GAP_GWA_GWA-AS-799_DA256563 |
| genomic_material_associated_references | In the protocol |
| genomic_material_preparation_date | 2022-06-01 |
| genomic_material_preparation_materials | In the protocol |
| genomic_material_preparation_process | HMW DNA Prep https://www.protocols.io/view/scalable-high-molecular-weight-dna-extraction-for-bnjhmcj6 |
| genomic_material_preparation_type | Leaf gDNA |
| genomic_material_prepared_by | Ashley Jones |
| herbarium_code | CANB |
| id_vetting_by | Schmidt-Lebuhn, Alexander |
| insert_size_range | 19760.0 |
| library_construction_protocol | Preparing whole genome and metagenome libraries using SMRTbell® prep kit 3.0 PN 102-166-600 APR2022 |
| library_id | 102.100.100/383177 |
| library_layout | NA |
| library_location | GWA FRIDGE 7 |
| library_ng_ul | 39.7 |
| library_prep_date | 2023-04-20 |
| library_prepared_by | Hadi Shamaileh |
| library_selection | RANDOM |
| library_source | GENOMIC |
| library_status | Library Sequenced |
| library_strategy | Preparing whole genome and metagenome libraries using SMRTbell® prep kit 3.0 PN 102-166-600 APR2022 with custom steps |
| library_type | Long read Hi Fi library with custom steps |
| location_notes | Edge of Mt Majura Nature Reserve towards Federal Hwy |
| metadata_revision_date | 2023-09-14 |
| metadata_revision_filename | 2023-09-07_Combined_plant_sample_metadata_forQCIF.xlsx |
| movie_length | 30 hours |
| nagoya_protocol_compliance | Yes |
| nagoya_protocol_permit_number | ACT PERMIT PL2018160 |
| preservation_temperature | −80°C |
| preservation_type | Tissue - freezing |
| project_aim | Reference genomes |
| sample_id | 102.100.100/376415 |
| sample_submission_date | 2022-06-01 |
| sample_submitter_email | alexander.schmidt-lebuhn@csiro.au |
| sample_submitter_name | Schmidt-Lebuhn, Alexander |
| scientific_name | Leucochrysum albicans |
| scientific_name_authorship | (A.Cunn.) Paul G.Wilson |
| scientific_name_notes | subsp. tricolor (DC.) N.G.Walsh |
| sequencing_facility | Genomics WA |
| sequencing_model | PacBio Sequel II |
| sequencing_platform | PACBIO_SMRT |
| state_or_territory | ACT |
| ticket | BPAOPS-1411 |
| voucher_herbarium_catalog_number | CANB 920543.1 |
| voucher_herbarium_collector_id | Schmidt-Lebuhn, Alexander |
| voucher_herbarium_event_date | 2021-01-12 |
| voucher_herbarium_record_number | 1997 |
| voucher_herbarium_recorded_by | Schmidt-Lebuhn, Alexander |