Marine Microbes Amplicons 18S 102.100.100/36347 B5KCL
Dataset size is: 20.82 MiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
| Sequence Data Type | illumina-amplicons |
| am_environment | Marine |
| amplicon | 18S |
| analysis_software_version | 2.5.1.3 |
| analytical_platform | MiSeq |
| archive_ingestion_date | 2017-10-20 |
| coastal_id | OI_Channel |
| collection_date | 2016-11-10 |
| comments | 36347_1_18S_UNSW_CGGAGCCT_GCGTAAGA_B5KCL |
| contextual_data_submission_date | 2017-07-13 |
| data_generated | 2017-10-20 |
| data_type | 18S |
| dataset_url | https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/amplicons/18s/ramaciotti/BPAOPS-348/ |
| date_of_transfer | 2017-10-09 |
| depth (m) | 2.0 |
| depth_lower (m) | 2.0 |
| depth_upper (m) | 2.0 |
| description | MM |
| dilution_used | neat |
| env_medium | Sea water [ENVO_00002149] |
| facility | RAMACIOTTI |
| fine_sediment (%) | 2.486981782 |
| flow_id | B5KCL |
| folder_name | 20171009_UNSW_BPA_MM_B5KCL |
| geo_loc_name | Australia: Queensland: Orpheus Island:Channel |
| lat_lon (decimal_degrees) | -18.574387 146.496432 |
| latitude (decimal_degrees) | -18.574387 |
| longitude (decimal_degrees) | 146.496432 |
| mm_amplicon_linkage | B5KCL |
| omics | Genomics |
| pass_fail | P |
| read_length | 250bp |
| reads | 61623.0 |
| sample_database_file | AM_db_v2_202105131603.db |
| sample_extraction_id | 36347_1 |
| sample_id | 102.100.100/36347 |
| sample_metadata_ingest_date | 2021-04-23_00:00:00 |
| sample_metadata_ingest_file | MM_curated_metadata_UTC_Upper_lower_depth_Amm_bad_sampleCurated_NRS_removed_Chl_merge_xlsx |
| sample_site_location_description | Channel |
| sample_submission_date | 2017-10-09 |
| sample_submitter | Bettina Glasl |
| sample_type | Sediment |
| source_mat_id | 102.100.100/36347 |
| submitter | Bettina Glasl |
| target | 18S |
| ticket | BPAOPS-348 |
| tot_carb (%) | 0.208 |
| tot_nitro (%) | 0.031 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/36347 |
| utc_date_sampled | 2016-11-10 |
| utc_time_sampled | 10:00:00 |
| work_order | 20009 |