Marine Microbes Metagenomics 102.100.100/21704
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Data and Resources
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
| Access Control Date | 2016-07-13 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| allo (mg/m3) | 0.0 |
| am_environment | Marine |
| ammonium (μmol/L) | 0.01 |
| analysis_software_version | CASAVA 1.8.2 |
| analytical_platform | HiSeq |
| archive_ingestion_date | 2016-04-15 |
| beta_beta_car (mg/m3) | 0.0023932 |
| bioplatforms_project | Marine Microbes Project (MM) |
| biotic_relationship | Free-living |
| but_fuco (mg/m3) | 0.0124878 |
| chlorophyll_a (mg/m3) | 0.0597188 |
| chlorophyll_b (mg/m3) | 0.0 |
| chlorophyll_c2 (mg/m3) | 0.0059955 |
| collection_date | 2013-08-04T20:45:00 |
| contextual_data_submission_date | 2015-11-19 |
| data_generated | 2016-04-15 |
| data_type | metagenome |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_url | https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/metagenomics/ramaciotti/BRLOPS-792/ |
| date_of_transfer | 2016-04-14 |
| depth (m) | 5.0 |
| depth_lower (m) | 5.0 |
| depth_upper (m) | 5.0 |
| description | MM |
| diadino (mg/m3) | 0.0049842 |
| diato (mg/m3) | 0.0 |
| dv_cphl_a (mg/m3) | 0.0262008 |
| env_medium | Sea water [ENVO_00002149] |
| facility | RAMACIOTTI |
| fluor (AU) | 19.9221 |
| folder_name | 20160314_UNSW_BPA_MM_HKL5CBCXX |
| fuco (mg/m3) | 0.0 |
| geo_loc_name | Australia:Coral Sea [GAZ_00008996] |
| hex_fuco (mg/m3) | 0.0174116 |
| insert_size_range | 250-2500 |
| lat_lon (decimal_degrees) | -13.8939 144.39577 |
| latitude (decimal_degrees) | -13.8939 |
| library_construction_protocol | Nextera XT |
| longitude (decimal_degrees) | 144.39577 |
| lut (mg/m3) | 0.0 |
| ncbi_bioproject_accession | PRJNA385736 |
| ncbi_bioproject_accession_number | PRJNA385736 |
| ncbi_biosample_accession | SAMN07483562 |
| ncbi_biosample_accession_number | SAMN07483562 |
| neo (mg/m3) | 0.0 |
| nitrate_nitrite (μmol/L) | 0.0 |
| omics | metagenomics |
| oxygen_ctd_wt (μmol/kg) | 209.464615 |
| perid (mg/m3) | 0.0 |
| phosphate (μmol/L) | 0.06 |
| pras (mg/m3) | 0.0 |
| pres_rel (dbar) | 5.1 |
| read_length | 250bp |
| salinity (PSU) | 35.196079 |
| sample_database_file | AM_db_v4.2_202508201559.db |
| sample_extraction_id | 21704_1 |
| sample_id | 102.100.100/21704 |
| sample_metadata_ingest_date | 2021-04-23 11:19:12 |
| sample_metadata_ingest_file | MM_curated_metadata_UTC_Upper_lower_depth_Amm_bad_sampleCurated_NRS_removed_Chl_merge_xlsx |
| sample_metadata_update_history | free_living_biotic_relationship_UPDATE_xlsx; |
| sample_site_location_description | Coral Sea |
| sample_submission_date | 2016-04-14 |
| sample_submitter | Mark Brown |
| sample_type | Pelagic |
| sequencer | HiSeq 2500 |
| silicate (μmol/L) | 1.4 |
| source_mat_id | 102.100.100/21704 |
| submitter | Mark Brown |
| temp (degC) | 25.044455 |
| ticket | BRLOPS-792 |
| tot_depth_water_col (m) | 1237.8 |
| transmittance (%) | 92.395462 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/21704 |
| utc_date_sampled | 2013-08-04 |
| utc_time_sampled | 20:45:00 |
| viola (mg/m3) | 0.0 |
| voyage_code | ss2013_t03 |
| work_order | 5 |
| zea (mg/m3) | 0.022029 |