Marine Microbes Metagenomics 102.100.100/21763
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
| Access Control Date | 2016-08-10 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| am_environment | Marine |
| ammonium (μmol/L) | 0.103 |
| analysis_software_version | bcl2fastq 2.17 |
| analytical_platform | HiSeq |
| archive_ingestion_date | 2016-06-02 |
| bioplatforms_project | Marine Microbes Project (MM) |
| biotic_relationship | Free-living |
| collection_date | 2015-06-11T08:33:00 |
| contextual_data_submission_date | 2015-11-19 |
| data_generated | 2016-06-02 |
| data_type | metagenome |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_url | https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/metagenomics/ramaciotti/BRLOPS-816/ |
| date_of_transfer | 2016-05-12 |
| depth (m) | 105.0 |
| depth_lower (m) | 105.0 |
| depth_upper (m) | 105.0 |
| description | MM |
| env_medium | Sea water [ENVO_00002149] |
| facility | RAMACIOTTI |
| fluor (AU) | 19.18539 |
| folder_name | 20160412_UNSW_BPA_MM_HM7K2BCXX |
| geo_loc_name | Australia:Tasman Sea [GAZ_00008998] |
| insert_size_range | 250-1500 |
| lat_lon (decimal_degrees) | -32.600817 153.354283 |
| latitude (decimal_degrees) | -32.600817 |
| library_construction_protocol | Nextera XT |
| longitude (decimal_degrees) | 153.354283 |
| ncbi_bioproject_accession | PRJNA385736 |
| ncbi_bioproject_accession_number | PRJNA385736 |
| ncbi_biosample_accession | SAMN07483621 |
| ncbi_biosample_accession_number | SAMN07483621 |
| nitrate_nitrite (μmol/L) | 3.627 |
| nitrite (μmol/L) | 0.275 |
| omics | metagenomics |
| oxygen (μmol/L) | 204.279 |
| oxygen_ctd_wt (μmol/kg) | 203.029449 |
| phosphate (μmol/L) | 0.323 |
| pres_rel (dbar) | 106.1 |
| read_length | 250bp |
| salinity (PSU) | 35.512566 |
| salinity_lab (PSU) | 35.515 |
| sample_database_file | AM_db_v4.2_202508201559.db |
| sample_extraction_id | 21763_1 |
| sample_id | 102.100.100/21763 |
| sample_metadata_ingest_date | 2021-04-23 11:19:12 |
| sample_metadata_ingest_file | MM_curated_metadata_UTC_Upper_lower_depth_Amm_bad_sampleCurated_NRS_removed_Chl_merge_xlsx |
| sample_metadata_update_history | free_living_biotic_relationship_UPDATE_xlsx; Lat_lon_reduce_sig_fig_curation_round_6dec_UPDATE_xlsx; |
| sample_site_location_description | FORSTER WE |
| sample_submission_date | 2016-05-12 |
| sample_submitter | Mark Brown |
| sample_type | Pelagic |
| sequencer | HiSeq 2500 |
| silicate (μmol/L) | 1.704 |
| source_mat_id | 102.100.100/21763 |
| submitter | Mark Brown |
| temp (degC) | 19.653585 |
| ticket | BRLOPS-816 |
| tot_depth_water_col (m) | 4005.0 |
| transmittance (%) | 97.611084 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/21763 |
| utc_date_sampled | 2015-06-11 |
| utc_time_sampled | 08:33:00 |
| voyage_code | IN2015_v03 |
| work_order | 5 |