Marine Microbes Metagenomics 102.100.100/35259

Port Hacking, metagenome HiSeq

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This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members
Access Control Date 2017-10-10
Access Control Mode date
Sequence Data Type illumina-shortread
Related Data doi:10.25953/z3tc-a185
allo (mg/m3) 0.068
allo_meth meth_2.2
alpha_beta_car (mg/m3) 0.039
alpha_beta_car_meth meth_2.2
am_environment Marine
ammonium (μmol/L) 0.57
ammonium_meth meth_2.2
analysis_software_version bcl2fastq 2.19.1.403
analytical_platform HiSeq
anth (mg/m3) 1e-10
anth_meth meth_2.2
archive_ingestion_date 2017-07-17
asta (mg/m3) 1e-10
asta_meth meth_2.2
bioplatforms_dataset_id 102.100.100/401949
bioplatforms_project Marine Microbes Project (MM)
bioplatforms_project_code AM_NRS
biotic_relationship Free-living
but_fuco (mg/m3) 0.047
but_fuco_meth meth_2.2
cantha (mg/m3) 1e-10
cantha_meth meth_2.2
chlorophyll_a (mg/m3) 1.012
chlorophyll_a_meth meth_2.2
chlorophyll_b (mg/m3) 0.127
chlorophyll_b_meth meth_2.2
chlorophyll_c1 (mg/m3) 1e-10
chlorophyll_c1_meth meth_2.2
chlorophyll_c2 (mg/m3) 0.117
chlorophyll_c2_meth meth_2.2
chlorophyll_c3 (mg/m3) 0.067
chlorophyll_c3_meth meth_2.2
chlorophyll_ctd (mg/m3) 1.616
chlorophyll_ctd_meth meth_2.2
collection_date 2016-07-19T00:19:00
conductivity_aqueous (S/m) 4.6983
conductivity_aqueous_meth meth_2.2
contextual_data_submission_date 2017-03-16
cphlide_a (mg/m3) 0.043
cphlide_a_meth meth_2.2
data_generated 2017-07-17
data_type metagenome
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
dataset_id 102.100.100/401949
dataset_url https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/metagenomics/ramaciotti/BPAOPS-228/
date_of_transfer 2017-07-12
density (kg/m3) 1025.7089
density_meth meth_2.2
depth (m) 0.0
depth_lower (m) 0.0
depth_upper (m) 0.0
description MM
diadchr (mg/m3) 1e-10
diadchr_meth meth_2.2
diadino (mg/m3) 0.022
diadino_meth meth_2.2
diato (mg/m3) 0.004
diato_meth meth_2.2
dino (mg/m3) 1e-10
dino_meth meth_2.2
dv_cphl_a (mg/m3) 0.014
dv_cphl_a_and_cphl_a (mg/m3) 1.026
dv_cphl_a_and_cphl_a_meth meth_2.2
dv_cphl_a_meth meth_2.2
dv_cphl_b (mg/m3) 1e-10
dv_cphl_b_and_cphl_b (mg/m3) 0.127
dv_cphl_b_and_cphl_b_meth meth_2.2
dv_cphl_b_meth meth_2.2
echin (mg/m3) 1e-10
echin_meth meth_2.2
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
facility RAMACIOTTI
folder_name 20170608_UNSW_BPA_MM_HNFW3BCXY
fuco (mg/m3) 0.145
fuco_meth meth_2.2
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:East Australian Current [GAZ_00000352]
gyro (mg/m3) 1e-10
gyro_meth meth_2.2
hex_fuco (mg/m3) 0.073
hex_fuco_meth meth_2.2
imos_site_code NRSPHB
insert_size_range 300-3000
keto_hex_fuco (mg/m3) 1e-10
keto_hex_fuco_meth meth_2.2
lat_lon (decimal_degrees) -34.1192 151.2267
latitude (decimal_degrees) -34.1192
library_construction_protocol Nextera XT
longitude (decimal_degrees) 151.2267
lut (mg/m3) 0.004
lut_meth meth_2.2
lyco (mg/m3) 1e-10
lyco_meth meth_2.2
mg_dvp (mg/m3) 1e-10
mg_dvp_meth meth_2.2
ncbi_bioproject_accession PRJNA385736
ncbi_bioproject_accession_number PRJNA385736
ncbi_biosample_accession SAMN07482995
ncbi_biosample_accession_number SAMN07482995
neo (mg/m3) 0.014
neo_meth meth_2.2
nitrate (μmol/L) 1.9
nitrate_meth meth_2.2
nitrite (μmol/L) 0.29
nitrite_meth meth_2.2
nrs_sample_code PHB20160719_0
nrs_trip_code PHB20160719
nucl_acid_ext meth_3.1.9
omics metagenomics
oxygen_ctd_vol (mL/L) 221.5516
oxygen_ctd_vol_meth meth_2.2
perid (mg/m3) 0.019
perid_meth meth_2.2
phide_a (mg/m3) 1e-10
phide_a_meth meth_2.2
phosphate (μmol/L) 0.26
phosphate_meth meth_2.2
phytin_a (mg/m3) 1e-10
phytin_a_meth meth_2.2
phytin_b (mg/m3) 1e-10
phytin_b_meth meth_2.2
picoeukaryotes (cells/mL) 10410.5
picoeukaryotes_meth meth_2.2int
pras (mg/m3) 0.029
pras_meth meth_2.2
prochlorococcus (cells/mL) 6585.5
prochlorococcus_meth meth_2.2int
pyrophide_a (mg/m3) 1e-10
pyrophide_a_meth meth_2.2
pyrophytin_a (mg/m3) 1e-10
pyrophytin_a_meth meth_2.2
read_length 250bp
salinity (PSU) 35.6613
salinity_lab (PSU) 35.672
salinity_lab_meth meth_2.2
salinity_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
samp_size (L) 2.0
samp_vol_we_dna_ext (L) 2.0
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.2_202508201559.db
sample_extraction_id 35259_1
sample_id 102.100.100/35259
sample_integrity_warnings WARNING: Storage or transport conditions compromised
sample_metadata_ingest_date 2022-11-29 17:13:14
sample_metadata_ingest_file AODN_AM_NRS_ALL_to_SEP2022_202211291332_GOLD_FullREPLACE_xlsx
sample_site_location_description Port Hacking
sample_submission_date 2017-07-12
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
sample_volume_notes Other - not recorded in field log sheets [assume 2 L as per protocol]
secchi_depth (m) 11.0
secchi_depth_meth meth_2.2
sequencer HiSeq 2500
silicate (μmol/L) 1.3
silicate_meth meth_2.2
source_mat_id 102.100.100/35259
store_cond meth_1.4
submitter Jodie van de Kamp
synechococcus (cells/mL) 13981.5
synechococcus_meth meth_2.2int
temp (degC) 18.305
temp_meth meth_2.2
ticket BPAOPS-228
tss (mg/L) 0.9
tss_meth meth_2.2int
turbidity (NTU) 0.2091
turbidity_meth meth_2.2
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/35259
utc_date_sampled 2016-07-19
utc_time_sampled 00:19:00
viola (mg/m3) 0.01
viola_meth meth_2.2
work_order 20008
zea (mg/m3) 0.023
zea_meth meth_2.2
zooplankton_biomass (mg/m3) 6.1709
zooplankton_biomass_meth meth_2.2int