Marine Microbes Metagenomics 102.100.100/35579

Yongala, fastQ HiSeq

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Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members
Access Control Date 2018-05-23
Access Control Mode date
Sequence Data Type illumina-shortread
Related Data doi:10.25953/z3tc-a185
alkalinity (μmol/kg) 2312.16
alkalinity_meth meth_2.2
allo (mg/m3) 1e-10
allo_meth meth_2.2
alpha_beta_car (mg/m3) 0.01
alpha_beta_car_meth meth_2.2
am_environment Marine
ammonium (μmol/L) 1e-10
ammonium_meth meth_2.2
analysis_software_version 1.8.2
analytical_platform HiSeq
anth (mg/m3) 1e-10
anth_meth meth_2.2
archive_ingestion_date 2018-03-01
asta (mg/m3) 1e-10
asta_meth meth_2.2
bioplatforms_dataset_id 102.100.100/401949
bioplatforms_project Marine Microbes Project (MM)
bioplatforms_project_code AM_NRS
biotic_relationship Free-living
but_fuco (mg/m3) 0.012
but_fuco_meth meth_2.2
cantha (mg/m3) 1e-10
cantha_meth meth_2.2
chlorophyll_a (mg/m3) 0.081
chlorophyll_a_meth meth_2.2
chlorophyll_b (mg/m3) 1e-10
chlorophyll_b_meth meth_2.2
chlorophyll_c1 (mg/m3) 1e-10
chlorophyll_c1_meth meth_2.2
chlorophyll_c2 (mg/m3) 0.018
chlorophyll_c2_meth meth_2.2
chlorophyll_c3 (mg/m3) 0.01
chlorophyll_c3_meth meth_2.2
chlorophyll_ctd (mg/m3) 0.3042
chlorophyll_ctd_meth meth_2.2
collection_date 2017-07-24T00:45:00
conductivity_aqueous (S/m) 5.1946
conductivity_aqueous_meth meth_2.2
contextual_data_submission_date 2017-09-23
cphlide_a (mg/m3) 0.01
cphlide_a_meth meth_2.2
data_generated 2018-03-01
data_type fastQ
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
dataset_id 102.100.100/401949
dataset_url https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/metagenomics/agrf/BPAOPS-518/
date_of_transfer 2018-02-22
density (kg/m3) 1024.2389
density_meth meth_2.2
depth (m) 26.0
depth_lower (m) 26.0
depth_upper (m) 26.0
description MM
diadino (mg/m3) 0.008
diadino_meth meth_2.2
diato (mg/m3) 1e-10
diato_meth meth_2.2
dino (mg/m3) 1e-10
dino_meth meth_2.2
dv_cphl_a (mg/m3) 0.051
dv_cphl_a_and_cphl_a (mg/m3) 0.132
dv_cphl_a_and_cphl_a_meth meth_2.2
dv_cphl_a_meth meth_2.2
dv_cphl_b (mg/m3) 1e-10
dv_cphl_b_and_cphl_b (mg/m3) 1e-10
dv_cphl_b_and_cphl_b_meth meth_2.2
dv_cphl_b_meth meth_2.2
echin (mg/m3) 1e-10
echin_meth meth_2.2
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
facility AGRF
folder_name 20180222_AGRF_BPA_MM_H5VK3BCX2
fuco (mg/m3) 0.011
fuco_meth meth_2.2
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:Great Barrier Reef Marine Park [GAZ_00049080]
gyro (mg/m3) 1e-10
gyro_meth meth_2.2
hex_fuco (mg/m3) 0.03
hex_fuco_meth meth_2.2
imos_site_code NRSYON
insert_size_range 480bp
keto_hex_fuco (mg/m3) 1e-10
keto_hex_fuco_meth meth_2.2
lat_lon (decimal_degrees) -19.3085 147.6184
latitude (decimal_degrees) -19.3085
library_construction_protocol Nextera DNA
longitude (decimal_degrees) 147.6184
lut (mg/m3) 1e-10
lut_meth meth_2.2
mg_dvp (mg/m3) 1e-10
mg_dvp_meth meth_2.2
ncbi_bioproject_accession PRJNA385736
ncbi_biosample_accession SAMN08953237
neo (mg/m3) 1e-10
neo_meth meth_2.2
nitrate (μmol/L) 1e-10
nitrate_meth meth_2.2
nitrite (μmol/L) 1e-10
nitrite_meth meth_2.2
nrs_sample_code YON20170724_26
nrs_trip_code YON20170724
nucl_acid_ext meth_3.1.9
omics metagenomics
oxygen_ctd_vol (mL/L) 211.026
oxygen_ctd_vol_meth meth_2.2
perid (mg/m3) 1e-10
perid_meth meth_2.2
phide_a (mg/m3) 1e-10
phide_a_meth meth_2.2
phosphate (μmol/L) 0.05
phosphate_meth meth_2.2
phytin_a (mg/m3) 1e-10
phytin_a_meth meth_2.2
phytin_b (mg/m3) 1e-10
phytin_b_meth meth_2.2
picoeukaryotes (cells/mL) 1307.5
picoeukaryotes_meth meth_2.2
pras (mg/m3) 1e-10
pras_meth meth_2.2
prochlorococcus (cells/mL) 18566.5
prochlorococcus_meth meth_2.2
pyrophide_a (mg/m3) 1e-10
pyrophide_a_meth meth_2.2
pyrophytin_a (mg/m3) 1e-10
pyrophytin_a_meth meth_2.2
read_length 250bp
salinity (PSU) 35.4064
salinity_lab (PSU) 35.402
salinity_lab_meth meth_2.2
salinity_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
samp_size (L) 2.0
samp_vol_we_dna_ext (L) 2.0
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.2_202508201559.db
sample_extraction_id 35579_1
sample_id 102.100.100/35579
sample_metadata_ingest_date 2022-11-29 17:13:14
sample_metadata_ingest_file AODN_AM_NRS_ALL_to_SEP2022_202211291332_GOLD_FullREPLACE_xlsx
sample_site_location_description Yongala
sample_submission_date 2018-02-22
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
sample_volume_notes Other - possible tubing leak during filtering
secchi_depth (m) 14.0
secchi_depth_meth meth_2.2
sequencer HiSeq 2500
silicate (μmol/L) 1.3
silicate_meth meth_2.2
source_mat_id 102.100.100/35579
store_cond meth_1.4
submitter Jodie van de Kamp
synechococcus (cells/mL) 23682.5
synechococcus_meth meth_2.2
temp (degC) 23.3981
temp_meth meth_2.2
ticket BPAOPS-518
total_co2 (μmol/kg) 1993.41
total_co2_meth meth_2.2
turbidity (NTU) 0.0538
turbidity_meth meth_2.2
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/35579
utc_date_sampled 2017-07-24
utc_time_sampled 00:45:00
viola (mg/m3) 1e-10
viola_meth meth_2.2
work_order 20017
zea (mg/m3) 0.063
zea_meth meth_2.2
zooplankton_biomass (mg/m3) 4.9933
zooplankton_biomass_meth meth_2.2int