Marine Microbes Metagenomics 102.100.100/36116
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
| Access Control Date | 2017-10-10 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| am_environment | Marine |
| ammonium (μmol/L) | 0.05 |
| ammonium_meth | -9999 |
| analysis_software_version | bcl2fastq 2.19.1.403 |
| analytical_platform | HiSeq |
| archive_ingestion_date | 2017-07-17 |
| bioplatforms_project | Marine Microbes Project (MM) |
| biotic_relationship | Free-living |
| collection_date | 2016-07-10T23:17:00 |
| contextual_data_submission_date | 2017-04-26 |
| data_generated | 2017-07-17 |
| data_type | metagenome |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_url | https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/metagenomics/ramaciotti/BPAOPS-229/ |
| date_of_transfer | 2017-07-12 |
| description | MM |
| env_medium | Sea water [ENVO_00002149] |
| facility | RAMACIOTTI |
| fluor (AU) | 24.49631 |
| fluor_meth | -9999 |
| folder_name | 20170630_UNSW_BPA_MM_HTCGWBCXY |
| geo_loc_name | Pacific Ocean [GAZ_00000360] |
| insert_size_range | 300-3000 |
| lat_lon (decimal_degrees) | -34.98228 152.25268 |
| latitude (decimal_degrees) | -34.98228 |
| library_construction_protocol | Nextera XT |
| longitude (decimal_degrees) | 152.25268 |
| ncbi_bioproject_accession | PRJNA385736 |
| ncbi_bioproject_accession_number | PRJNA385736 |
| ncbi_biosample_accession | SAMN07452655 |
| ncbi_biosample_accession_number | SAMN07452655 |
| nitrate (μmol/L) | 1.77 |
| nitrate_meth | -9999 |
| nitrite (μmol/L) | 0.184 |
| nitrite_meth | -9999 |
| omics | metagenomics |
| oxygen (μmol/L) | 211.514 |
| oxygen_ctd_wt (μmol/kg) | 217.136118 |
| oxygen_ctd_wt_meth | -9999 |
| oxygen_meth | -9999 |
| phosphate (μmol/L) | 0.18 |
| phosphate_meth | -9999 |
| read_length | 250bp |
| salinity (PSU) | 35.751914 |
| salinity_lab (PSU) | 35.744 |
| salinity_lab_meth | -9999 |
| salinity_meth | -9999 |
| sample_attribution | Martin Ostrowski |
| sample_database_file | AM_db_v4.2_202508201559.db |
| sample_extraction_id | 36116_1 |
| sample_id | 102.100.100/36116 |
| sample_metadata_ingest_date | 2024-06-21 15:28:30 |
| sample_metadata_ingest_file | IN2016_t01_amdb_formatted_metadata_xlsx |
| sample_site_location_description | Australia:Tasman Sea - shelf |
| sample_submission_date | 2017-07-12 |
| sample_submitter | Martin Ostrowski |
| sample_type | Pelagic |
| sequencer | HiSeq 2500 |
| silicate (μmol/L) | 0.7 |
| silicate_meth | -9999 |
| source_mat_id | 102.100.100/36116 |
| submitter | Martin Ostrowski |
| temp (degC) | 20.787479 |
| temp_meth | -9999 |
| ticket | BPAOPS-229 |
| tot_depth_water_col (m) | 4871.0 |
| tot_depth_water_col_meth | -9999 |
| transmittance (%) | 98.298759 |
| transmittance_meth | -9999 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/36116 |
| utc_date_sampled | 2016-07-10 |
| utc_time_sampled | 23:17:00 |
| voyage_code | IN2016_t01 |
| work_order | n/a |