Brush-tailed rock-wallaby, Whole genomes, genome linked read, liver
Dataset size is: 137.34 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
| Access Control Date | 2018-08-07 |
| Access Control Mode | date |
| Sequence Data Type | illumina-10x |
| access_rights | NA |
| ala_specimen_url | NA |
| ancillary_notes | Multiple extractions for this specimen | Wild caught, died in captivity at Macquarie University | voucher at ANWC |
| archive_ingestion_date | 2017-08-17 |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/10x_raw/BPAOPS-283/ |
| birth_date | unknown |
| bpa_dataset_id | 102.100.100/40127 |
| bpa_library_id | 102.100.100/52870 |
| bpa_sample_id | 102.100.100/40068 |
| bpa_work_order | 40004 |
| class | Mammalia |
| collection_date | 1987-06-15 |
| collection_method | cage trap |
| collector | Robert L Close | Mark Eldridge |
| collector_sample_id | S766, X66 |
| common_name | Brush-tailed rock-wallaby |
| coord_uncertainty_metres | NA |
| country | Australia |
| custodian | Mark Eldridge | Australian Museum |
| data_custodian | Janine Deakin | Sally Potter |
| data_generated | 2017-08-17 |
| data_type | Illumina FASTQ |
| dataset_url | https://data.bioplatforms.com/dataset/bpa-omg-10x-raw-102_100_100_40066-10x_hjjcwalxx |
| date_of_transfer | 2017-08-07 |
| ddrad_data | no |
| ddrad_dataset_ids | NA |
| death_date | 1987-06-15 |
| description | 10X Genomics- 102.100.100/40066 |
| dna_conc_ng_ul | 21.1 |
| dna_extracted_by | Sally Potter |
| dna_extraction_date | 2017-02-13 |
| dna_extraction_method | Qiagen genomic tip |
| dna_treatment | >50kb size selection |
| exon_capture_data | no |
| exon_capture_dataset_ids | NA |
| experimental_design | 10X Chromium, 2 lanes HiSeq Xten |
| facility_sample_id | unknown |
| family | Macropodidae |
| flow_id | 10X_HJJCWALXX |
| flowcell_id | 10X_HJJCWALXX |
| folder_name | 40066_OMG_UNSW_10X_HJJCWALXX |
| genome_data | yes |
| genome_dataset_ids | 40127.0 |
| genus | Petrogale |
| habitat | unknown |
| identified_by | Robert L Close | Mark Eldridge |
| institution_name | Australian Museum |
| library_comments | Data portal has wrong BPA_sample_ID |
| library_index_id | NA |
| library_index_sequence | NA |
| library_location | Ramaciotti |
| library_ng_ul | unknown |
| library_oligo_sequence | NA |
| library_pcr_cycles | NA |
| library_pcr_reps | NA |
| library_prep_method | 10X Chromium |
| library_prepared_by | Ramaciotti |
| library_status | Sequenced |
| library_type | genome linked read |
| life_stage | adult organism |
| location_text | Jenolan Caves |
| n_libraries_pooled | 1 |
| omg_project | Whole genomes |
| order | Diprotodontia |
| phylum | Chordata |
| prior_genetics | CytB Genbank accession JQ042125.1 | ND2 Genbank accession JQ042148.1 | CO1 Genbank accession JQ042171.1 | BRCA1 Genbank accession JQ42194.1 | Omega globin Genbank accession JQ042217.1 | SRA accession SRX2512313 | PMID 11742554 | PMID 22122943 | PMID 24772286 | PMID 8830099 | PMID 28265284 | DOI: 10.1071/ZO01034 | DOI:10.1071/ZO00078 | DOI:10.1644/1545-1542(2002)083<0437:MGAOTN>2.0.CO;2 | DOI:10.1071/WR03030 | |
| sample_quality | good |
| sample_submission_date | 2017-08-07 |
| sequence_length | 150bp PE |
| sequencing_facility | Ramaciotti |
| sequencing_platform | Illumina HiSeq Xten |
| sex | male |
| software_version | Illumina bcl2fastq 2.16.0 |
| source_population | Jenolan Caves |
| species | penicillata |
| species_name | Petrogale penicillata |
| state_or_region | New South Wales |
| subspecies_or_variant | cESU |
| taxon_id | 54088 |
| taxonomic_group | marsupial |
| ticket | BPAOPS-283 |
| tissue_collection | EBU |
| tissue_number | EBU35579 |
| tissue_preservation | frozen |
| tissue_type | liver |
| trace_lab | no |
| type_status | unknown |
| voucher_number | ANWC M16835 |
| voucher_or_tissue_number | ANWC M16835 |
| wild_captive | semi_captive |