Bare-nosed wombat, Whole genomes, genome linked read, spleen
Dataset size is: 143.66 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
| Access Control Date | 2018-08-08 |
| Access Control Mode | date |
| Sequence Data Type | illumina-10x |
| access_rights | no restrictions |
| ala_specimen_url | NA |
| ancillary_notes | Mange affected wombat |
| archive_ingestion_date | 2017-10-04 |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/10x_raw/BPAOPS-343/ |
| birth_date | unknown |
| bpa_dataset_id | 102.100.100/40135 |
| bpa_library_id | 102.100.100/52871 |
| bpa_sample_id | 102.100.100/40134 |
| bpa_work_order | 40007 |
| class | Mammalia |
| collection_date | 2014-12-15 |
| collection_method | euthanased |
| collector | Scott Carver |
| collector_sample_id | NA |
| common_name | Bare-nosed wombat |
| coord_uncertainty_metres | unknown |
| country | Australia |
| custodian | Scott Carver |
| data_custodian | Scott Carver | Alex Hewitt |
| data_generated | 2017-10-04 |
| data_type | Illumina FASTQ |
| dataset_url | https://data.bioplatforms.com/dataset/bpa-omg-10x-raw-102_100_100_40134-10x_h7vwyccxy |
| date_of_transfer | 2017-08-08 |
| ddrad_data | no |
| ddrad_dataset_ids | NA |
| death_date | 2014-12-15 |
| description | 10X Genomics- 102.100.100/40314 |
| dna_conc_ng_ul | 250.0 |
| dna_extracted_by | Sandu Hung |
| dna_extraction_date | 2017-07-14 |
| dna_extraction_method | Qiagen genomic tip 20G |
| dna_treatment | >50kb size selection |
| exon_capture_data | no |
| exon_capture_dataset_ids | NA |
| experimental_design | 10X Chromium, 2 lanes HiSeq Xten |
| facility_sample_id | unknown |
| family | Vombatidae |
| file | 40134_UNSW_10x_SupernovaRun |
| flow_id | 10X_H7VWYCCXY |
| flowcell_id | 10X_H7VWYCCXY |
| folder_name | 40314_OMG_UNSW_10x_H7VWYCCXY |
| genome_data | yes |
| genome_dataset_ids | 40135.0 |
| genus | Vombatus |
| habitat | Temperate sclerophyllous dry forest |
| identified_by | Scott Carver |
| institution_name | University of Tasmania |
| latitude | -41.1487 |
| library_comments | NA |
| library_index_id | NA |
| library_index_sequence | NA |
| library_location | Ramaciotti |
| library_ng_ul | unknown |
| library_oligo_sequence | NA |
| library_pcr_cycles | NA |
| library_pcr_reps | NA |
| library_prep_method | 10X Chromium |
| library_prepared_by | Ramaciotti |
| library_status | Data available |
| library_type | genome linked read |
| life_stage | adult organism |
| location_text | Narawntapu National Park |
| longitude | 146.6039 |
| n_libraries_pooled | 1 |
| omg_project | Whole genomes |
| order | Diprotodontia |
| phylum | Chordata |
| prior_genetics | Previous Illumina SR |
| sample_quality | good |
| sample_submission_date | 2017-08-08 |
| sequence_length | 150bp PE |
| sequencing_facility | Ramaciotti |
| sequencing_platform | Illumina HiSeq Xten |
| sex | male |
| software_version | Illumina bcl2fastq 2.19.0 and Supernova Run Files |
| source_population | Narawntapu National Park |
| species | ursinus |
| species_name | Vombatus ursinus |
| state_or_region | Tasmania |
| subspecies_or_variant | tasmaniensis |
| taxon_id | 29139 |
| taxonomic_group | marsupial |
| ticket | BPAOPS-343 |
| tissue_collection | Mammal |
| tissue_number | WM1 |
| tissue_preservation | ethanol | frozen |
| tissue_type | spleen |
| trace_lab | no |
| type_status | unknown |
| voucher_number | no voucher |
| voucher_or_tissue_number | WM1 |
| wild_captive | wild |