Leadbeater's possum, Whole genomes, genome linked read, other
Dataset size is: 11.35 KiB
Data and Resources
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52877_S1_L002_I1_001.fastq.gz Metadata Only FASTQ
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52877_S1_L002_R2_001.fastq.gz Metadata Only FASTQ
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52877_S1_L001_R2_001.fastq.gz Metadata Only FASTQ
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52877_S1_L001_I1_001.fastq.gz Metadata Only FASTQ
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52877_S1_L002_R1_001.fastq.gz Metadata Only FASTQ
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52877_S1_L001_R1_001.fastq.gz Metadata Only FASTQ
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40133_OMG_UNSW_10X_H7WTTDRXX_met... Metadata Only XLSX
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
| Access Control Date | 2020-06-13 |
| Access Control Mode | date |
| Sequence Data Type | illumina-10x |
| access_rights | no restrictions |
| ala_specimen_url | NA |
| ancillary_notes | Tissue cultured fibrobasts from external ear cartilage |
| archive_ingestion_date | 2019-07-15 |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/10x_raw/BPAOPS-829/ |
| birth_date | unknown |
| bpa_dataset_id | 102.100.100/40133 |
| bpa_library_id | 102.100.100/52877 |
| bpa_sample_id | 102.100.100/41498 |
| bpa_work_order | 40037 |
| class | Mammalia |
| collection_date | 2018-05-28 |
| collection_method | nest box |
| collector | Dan Harley | Zoos Victoria |
| collector_sample_id | STGW_17_1M |
| common_name | Leadbeater's possum |
| coord_uncertainty_metres | 10.0 |
| country | Australia |
| custodian | Peter Temple-Smith |
| data_custodian | Sam Banks |
| data_generated | 2019-07-15 |
| data_type | Illumina FASTQ |
| dataset_url | (ingested) |
| date_of_transfer | 2019-06-14 |
| ddrad_data | no |
| ddrad_dataset_ids | NA |
| death_date | unknown |
| description | 10X Genomics/NovaSeq 6000- Leadbeateri DNA |
| dna_conc_ng_ul | unknown |
| dna_extracted_by | Seungmin Ham |
| dna_extraction_date | unknown |
| dna_extraction_method | unknown |
| dna_treatment | >50kb size selection |
| exon_capture_data | no |
| exon_capture_dataset_ids | NA |
| experimental_design | 10X Chromium, 2 lanes HiSeq 2500 Rapid (150bp PE) |
| facility_sample_id | DEA6785A2 |
| family | Petauridae |
| file | 52877_S1_L001_R1_001.fastq.gz| 52877_S1_L001_R2_001.fastq.gz | 52877_S1_L001_I1_001.fastq.gz | 52877_S1_L002_R1_001.fastq.gz | 52877_S1_L002_R2_001.fastq.gz | 52877_S1_L002_I1_001.fastq.gz |
| flow_id | 10X_H7WTTDRXX |
| flowcell_id | H7WTTDRXX |
| folder_name | 40133_OMG_UNSW_10X_H7WTTDRXX |
| genome_data | yes |
| genome_dataset_ids | 40133.0 |
| genus | Gymnobelideus |
| habitat | Subalpine woodland |
| identified_by | Dan Harley |
| institution_name | Monash University |
| latitude | -37.5 |
| library_comments | NA |
| library_index_id | NA |
| library_index_sequence | NA |
| library_location | Ramaciotti |
| library_ng_ul | unknown |
| library_oligo_sequence | NA |
| library_pcr_cycles | NA |
| library_pcr_reps | NA |
| library_prep_method | 10X Chromium |
| library_prepared_by | Ramaciotti |
| library_status | Not yet extracted |
| library_type | genome linked read |
| life_stage | adult organism |
| location_text | Mount St Gwinear Road, Baw Baw National Park |
| longitude | 146.19 |
| n_libraries_pooled | 1 |
| omg_project | Whole genomes |
| order | Diprotodontia |
| phylum | Chordata |
| prior_genetics | unknown |
| sample_quality | high quality |
| sample_submission_date | 2019-06-14 |
| sequence_length | 150bp PE |
| sequencing_facility | Ramaciotti, UNSW |
| sequencing_platform | NovaSeq 6000 |
| sex | male |
| software_version | bcltofastq2 v2.19 |
| source_population | Mt Saint Gwinear, Baw Baw National Park |
| species | leadbeateri |
| species_name | Gymnobelideus leadbeateri |
| state_or_region | Victoria |
| subspecies_or_variant | NA |
| taxon_id | 38618 |
| taxonomic_group | marsupial |
| ticket | BPAOPS-829 |
| tissue_collection | Australian Frozen Zoo |
| tissue_number | POSS13B |
| tissue_preservation | liquid nitrogen |
| tissue_type | other |
| trace_lab | no |
| type_status | unknown |
| voucher_id | POSS13 |
| voucher_number | no voucher |
| voucher_or_tissue_number | POSS13 |
| wild_captive | wild |