Greater bilby | Lesser bilby
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Data Policy
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
| Access Control Date | 2022-07-21 |
| Access Control Mode | date |
| Sequence Data Type | analysed-data |
| access_rights | location information restricted |
| ala_specimen_url | https://bie.ala.org.au/species/urn:lsid:biodiversity.org.au:afd.taxon:3814d122-c95f-467f-a3a2-2b269931b74f |
| analysis_date | 2021-07-05 |
| analysis_description | Joint genotyping of 12 greater bilby and 4 lesser bilby resequenced genome samples to obtain a common set of variants |
| analysis_method | DRAGEN Joint Genotyping |
| analysis_method_version | 3.8.4 |
| analysis_name | mMacLagLeu16ResSG.1 |
| archive_ingestion_date | 2021-07-21 |
| barcode_id | 26182.0 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/analysed/BPAOPS-1117/joint_genotyping/ |
| bioplatforms_project | Oz Mammals Genomics Initiative |
| bioplatforms_secondarydata_id | 102.100.100/352345 |
| class | Mammalia |
| common_name | Greater bilby | Lesser bilby |
| computational_infrastructure | Illumina Basespace |
| contact_person | Carolyn Hogg |
| country | Australia |
| custodian | Carolyn Hogg |
| data_generated | 2021-07-21 |
| data_type | Analysed Data |
| dataset_context | Common variant set |
| dataset_id | 352377 |
| dataset_id_description | Bioplatforms Australia |
| date_of_transfer | 2021-07-21 |
| ddrad_data | NA |
| ddrad_dataset_ids | NA |
| description | Joint Genotyping Lesser and Greater Bilbies Analysed Data |
| exon_capture_data | NA |
| exon_capture_dataset_ids | NA |
| family | Thylacomyidae |
| folder_name | joint_genotyping |
| genus | Macrotis |
| institution_name | University of Sydney |
| library_id | 352361, 352362, 352363, 352365, 352366, 352367, 352368, 352369, 352370, 352371, 352372, 352373, 352374, 352375, 352376 |
| library_id_description | Bioplatforms Australia |
| order | Peramelemorphia |
| phylum | Chordata |
| reference_genome | bilby.v1.4.3.hypo.hirise.curation.renamed.fasta |
| sample_id | 352349, 352350, 352351, 352353, 352354, 352355, 352356, 352357, 352358, 352359, 352360, 40262, 361852, 352347, 361686 |
| sample_id_description | Bioplatforms Australia |
| sample_submission_date | 2021-07-21 |
| scientific_name | Macrotis lagotis | Macrotis leucura |
| sequencing_technology | NovaSeq 6000 S2 2x150bp_Flowcell |
| species | lagotis |
| subspecies_or_variant | NA |
| system_used | Illumina Basespace |
| taxon_id | 92651 |
| ticket | BPAOPS-1117 |
| tissue_number | 000786C0A7 |
| version_method_version_link | https://www.illumina.com/products/by-type/informatics-products/basespace-sequence-hub/apps/edico-genome-inc-dragen-joint-genotyping-pipeline.html |
| voucher_number | no voucher |
| voucher_or_tissue_number | 000786C0A7 |