Greater bilby
Dataset size is: 0.00 Bit
Data and Resources
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352388_0007C7B720.bam Metadata Only BAM
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352388_0007C7B720.hard-filtered.gvcf.gz Metadata Only GVCF
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352388_0007C7B720.hard-filtered.... Metadata Only MD5
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352388_0007C7B720.hard-filtered.vcf.gz Metadata Only VCF
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352388_0007C7B720.hard-filtered.... Metadata Only MD5
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352388_0007C7B720.multiqc_report.html Metadata Only HTML
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352388_0007C7B720.bam.bai Metadata Only
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352388_0007C7B720.bam.md5sum Metadata Only MD5
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
| Access Control Date | 2022-07-21 |
| Access Control Mode | date |
| Sequence Data Type | analysed-data |
| access_rights | location information restricted |
| ala_specimen_url | https://bie.ala.org.au/species/urn:lsid:biodiversity.org.au:afd.taxon:3814d122-c95f-467f-a3a2-2b269931b74f |
| analysis_date | 2021-07-05 |
| analysis_description | Aligment to reference genome and variant calling |
| analysis_method | DRAGEN Germline |
| analysis_method_version | 3.8.4 |
| analysis_name | mMacLag352360ReSG.1 |
| analysis_qc | Full QC report attached |
| archive_ingestion_date | 2021-07-21 |
| barcode_id | 26182.0 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/analysed/BPAOPS-1116/greaterbilbies/ |
| bioplatforms_project | Oz Mammals Genomics Initiative |
| bioplatforms_secondarydata_id | 102.100.100/352388 |
| bpa_library_id | 102.100.100/352372 |
| bpa_sample_id | 102.100.100/352360 |
| class | Mammalia |
| common_name | Greater bilby |
| computational_infrastructure | Illumina Basespace |
| contact_person | Carolyn Hogg |
| coord_uncertainty_metres | NA |
| country | Australia |
| custodian | Carolyn Hogg |
| data_generated | 2021-07-21 |
| data_type | Analysed Data |
| dataset_context | Resequenced genome |
| dataset_id | 352377 |
| dataset_id_description | Bioplatforms Australia |
| date_of_transfer | 2021-07-21 |
| ddrad_data | NA |
| ddrad_dataset_ids | NA |
| description | Greater Bilbies Analysed Data |
| exon_capture_data | NA |
| exon_capture_dataset_ids | NA |
| family | Thylacomyidae |
| folder_name | greaterbilbies |
| genome_coverage | 22.9 |
| genus | Macrotis |
| institution_name | University of Sydney |
| library_id | 352372 |
| library_id_description | Bioplatforms Australia |
| order | Peramelemorphia |
| phylum | Chordata |
| reference_genome | bilby.v1.4.3.hypo.hirise.curation.renamed.fasta |
| sample_id | 352360 |
| sample_id_description | Bioplatforms Australia |
| sample_submission_date | 2021-07-21 |
| scientific_name | Macrotis lagotis |
| sequencing_technology | NovaSeq 6000 S2 2x150bp_Flowcell |
| species | lagotis |
| subspecies_or_variant | NA |
| system_used | Illumina Basespace |
| taxon_id | 92651 |
| ticket | BPAOPS-1116 |
| tissue_number | 0007C7B720 |
| version_method_version_link | https://www.illumina.com/products/by-type/informatics-products/basespace-sequence-hub/apps/dragen-germline.html |
| voucher_number | no voucher |
| voucher_or_tissue_number | 0007C7B720 |