Eastern Pygmy Possum, Conservation, exon capture, tissue
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Data and Resources
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Additional Info Show Blank Fields
Field | Value |
---|---|
Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
Access Control Date | 2021-12-07 |
Access Control Mode | date |
Sequence Data Type | illumina-exoncapture |
access_rights | location information restricted |
ala_specimen_url | NA |
ancillary_notes | NA |
archive_ingestion_date | 2020-12-10 |
associated_media | unknown |
barcode_id | NA |
base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/exon_capture/brf/BPAOPS-1014/ |
birth_date | unknown |
bpa_dataset_id | 102.100.100/52643 |
bpa_library_id | 102.100.100/363717 |
bpa_sample_id | 102.100.100/361586 |
bpa_work_order | 40070 |
class | Mammalia |
collection_date | 2001-12-28 |
collection_method | unknown |
collector | J Petas |
collector_sample_id | unknown |
common_name | Eastern Pygmy Possum |
coord_uncertainty_metres | NA |
country | Australia |
custodian | Greta Frankham |
data_custodian | Greta Frankham |
data_generated | 2020-12-10 |
data_type | Illumina FASTQ |
date_of_transfer | 2020-12-07 |
ddrad_data | no |
ddrad_dataset_ids | NA |
death_date | unknown |
description | Novaseq 6000 A00548_0130_AMacDonald_52643_Marsupial_gDNA |
dna_conc_ng_ul | unknown |
dna_extracted_by | Greta Frankham |
dna_extraction_date | unknown |
dna_extraction_method | High salt |
dna_treatment | 4 biorupter cycles |
exon_capture_data | yes |
exon_capture_dataset_ids | 52643.0 |
experimental_design | Nimblegen Exon Capture, marsupial probes V2, dual indexed |
facility | brf |
facility_sample_id | 363717_AHV5LWDRXX_CTCGCGC |
family | Burramyidae |
flowcell_id | AHV5LWDRXX |
folder_name | A00548_0130_AMacDonald_52643_Marsupial_gDNA.tar |
genome_data | no |
genome_dataset_ids | NA |
genus | Cercartetus |
habitat | unknown |
identified_by | unknown |
institution_name | Australian Museum |
library_comments | library ng/µL for 200-1000 bp range |
library_location | ANU EBL |
library_ng_ul | 89.9720368103 |
library_pcr_cycles | 12.0 |
library_pcr_reps | 2.0 |
library_prep_date | 2020-10-27 |
library_prep_method | Meyer and Kircher protocol |
library_prepared_by | Anna MacDonald | Liz Broady |
library_status | Submitted for sequencing |
library_type | exon capture |
life_stage | not determined |
location_text | Helensburgh |
n_libraries_pooled | 288 |
omg_project | Conservation |
order | Diprotodontia |
p5_library_index_id | 6.0 |
p5_library_index_sequence | ATGGAGA |
p5_library_oligo_sequence | AATGATACGGCGACCACCGAGATCTACACtctccatACACTCTTTCCCTACACGACGCTCTT |
p7_library_index_id | 56.0 |
p7_library_index_sequence | CTCGCGC |
p7_library_oligo_sequence | CAAGCAGAAGACGGCATACGAGATgcgcgagGTGACTGGAGTTCAGACGTGT |
phylum | Chordata |
prior_genetics | unknown |
sample_quality | unknown |
sample_submission_date | 2020-12-07 |
sequence_length | 100bp PE |
sequencing_facility | BRF |
sequencing_platform | Illumina NovaSeq SP 200 cycle |
sex | not determined |
source_population | unknown |
species | nanus |
species_name | Cercartetus nanus |
state_or_region | New South Wales |
subspecies_or_variant | NA |
taxon_id | 190653 |
taxonomic_group | marsupial |
ticket | BPAOPS-1014 |
tissue_collection | Mammalogy |
tissue_number | AM174_103 |
tissue_preservation | frozen |
tissue_type | tissue |
trace_lab | no |
type_status | unknown |
voucher_number | AM M.36193.003 |
voucher_or_tissue_number | AM M.36193.003 |
wild_captive | wild |