Little Pygmy Possum, Conservation, exon capture, tissue
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Data and Resources
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
| Access Control Date | 2021-12-07 |
| Access Control Mode | date |
| Sequence Data Type | illumina-exoncapture |
| access_rights | location information restricted |
| ala_specimen_url | NA |
| ancillary_notes | NA |
| archive_ingestion_date | 2020-12-10 |
| associated_media | unknown |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/exon_capture/brf/BPAOPS-1014/ |
| birth_date | unknown |
| bpa_dataset_id | 102.100.100/52643 |
| bpa_library_id | 102.100.100/363748 |
| bpa_sample_id | 102.100.100/361627 |
| bpa_work_order | 40070 |
| class | Mammalia |
| collection_date | 1999-05-03 |
| collection_method | unknown |
| collector | unknown |
| collector_sample_id | unknown |
| common_name | Little Pygmy Possum |
| coord_uncertainty_metres | NA |
| country | Australia |
| custodian | Kevin C Rowe | Museums Victoria |
| data_custodian | Greta Frankham |
| data_generated | 2020-12-10 |
| data_type | Illumina FASTQ |
| date_of_transfer | 2020-12-07 |
| ddrad_data | no |
| ddrad_dataset_ids | NA |
| death_date | unknown |
| description | Novaseq 6000 A00548_0130_AMacDonald_52643_Marsupial_gDNA |
| dna_conc_ng_ul | unknown |
| dna_extracted_by | Greta Frankham |
| dna_extraction_date | unknown |
| dna_extraction_method | Bioline Isolate II Kit |
| dna_treatment | 7 biorupter cycles |
| exon_capture_data | yes |
| exon_capture_dataset_ids | 52643.0 |
| experimental_design | Nimblegen Exon Capture, marsupial probes V2, dual indexed |
| facility | brf |
| facility_sample_id | 363748_AHV5LWDRXX_GACTTCT |
| family | Burramyidae |
| flowcell_id | AHV5LWDRXX |
| folder_name | A00548_0130_AMacDonald_52643_Marsupial_gDNA.tar |
| genome_data | no |
| genome_dataset_ids | NA |
| genus | Cercartetus |
| habitat | unknown |
| identified_by | unknown |
| institution_name | Museums Victoria |
| library_comments | library ng/µL for 200-1000 bp range |
| library_location | ANU EBL |
| library_ng_ul | 6.3383934471 |
| library_pcr_cycles | 14.0 |
| library_pcr_reps | 3.0 |
| library_prep_date | 2020-10-27 |
| library_prep_method | Meyer and Kircher protocol |
| library_prepared_by | Anna MacDonald | Liz Broady |
| library_status | Submitted for sequencing |
| library_type | exon capture |
| life_stage | not determined |
| location_text | Nunamura |
| n_libraries_pooled | 288 |
| omg_project | Conservation |
| order | Diprotodontia |
| p5_library_index_id | 5.0 |
| p5_library_index_sequence | GCAAGAT |
| p5_library_oligo_sequence | AATGATACGGCGACCACCGAGATCTACACatcttgcACACTCTTTCCCTACACGACGCTCTT |
| p7_library_index_id | 93.0 |
| p7_library_index_sequence | GACTTCT |
| p7_library_oligo_sequence | CAAGCAGAAGACGGCATACGAGATagaagtcGTGACTGGAGTTCAGACGTGT |
| phylum | Chordata |
| prior_genetics | unknown |
| sample_quality | unknown |
| sample_submission_date | 2020-12-07 |
| sequence_length | 100bp PE |
| sequencing_facility | BRF |
| sequencing_platform | Illumina NovaSeq SP 200 cycle |
| sex | not determined |
| source_population | unknown |
| species | lepidus |
| species_name | Cercartetus lepidus |
| state_or_region | Tasmania |
| subspecies_or_variant | NA |
| taxon_id | 190652 |
| taxonomic_group | marsupial |
| ticket | BPAOPS-1014 |
| tissue_collection | Mammalogy |
| tissue_number | AM174_199 |
| tissue_preservation | ethanol |
| tissue_type | tissue |
| trace_lab | no |
| type_status | unknown |
| voucher_number | NMV Z35082 |
| voucher_or_tissue_number | NMV Z35082 |
| wild_captive | wild |