Southern Brown Bandicoot, Conservation, exon capture, liver
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Data and Resources
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
| Access Control Date | 2021-12-07 |
| Access Control Mode | date |
| Sequence Data Type | illumina-exoncapture |
| access_rights | no restrictions |
| ala_specimen_url | NA |
| ancillary_notes | NA |
| archive_ingestion_date | 2020-12-10 |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/exon_capture/brf/BPAOPS-1014/ |
| birth_date | unknown |
| bpa_dataset_id | 102.100.100/52643 |
| bpa_library_id | 102.100.100/363773 |
| bpa_sample_id | 102.100.100/361634 |
| bpa_work_order | 40070 |
| class | Mammalia |
| collection_date | 1983-10-26 |
| collection_method | unknown |
| collector | unknown |
| collector_sample_id | NA |
| common_name | Southern Brown Bandicoot |
| coord_uncertainty_metres | unknown |
| country | Australia |
| custodian | Steve Cooper |
| data_custodian | Steve Cooper | Kym Ottewell | Anna MacDonald |
| data_generated | 2020-12-10 |
| data_type | Illumina FASTQ |
| date_of_transfer | 2020-12-07 |
| ddrad_data | no |
| ddrad_dataset_ids | NA |
| death_date | unknown |
| description | Novaseq 6000 A00548_0130_AMacDonald_52643_Marsupial_gDNA |
| dna_conc_ng_ul | 1.77 |
| dna_extracted_by | Liz Broady |
| dna_extraction_date | 2020-07-28 |
| dna_extraction_method | salting out |
| dna_treatment | 4 biorupter cycles |
| exon_capture_data | yes |
| exon_capture_dataset_ids | 52643.0 |
| experimental_design | Nimblegen Exon Capture, marsupial probes V2, dual indexed |
| facility | brf |
| facility_sample_id | 363773_AHV5LWDRXX_TTCTAGG |
| family | Peramelidae |
| flowcell_id | AHV5LWDRXX |
| folder_name | A00548_0130_AMacDonald_52643_Marsupial_gDNA.tar |
| genome_data | no |
| genome_dataset_ids | NA |
| genus | Isoodon |
| habitat | unknown |
| identified_by | unknown |
| institution_name | Australian Biological Tissue Collection, South Australian Museum |
| latitude | -32.4569 |
| library_comments | library ng/µL for 200-1000 bp range |
| library_location | ANU EBL |
| library_ng_ul | 78.0677550826 |
| library_pcr_cycles | 12.0 |
| library_pcr_reps | 2.0 |
| library_prep_date | 2020-10-27 |
| library_prep_method | Meyer and Kircher protocol |
| library_prepared_by | Anna MacDonald | Liz Broady |
| library_status | Submitted for sequencing |
| library_type | exon capture |
| life_stage | not determined |
| location_text | West Franklin Island |
| longitude | 133.6375 |
| n_libraries_pooled | 288 |
| omg_project | Conservation |
| order | Peramelemorphia |
| p5_library_index_id | 5.0 |
| p5_library_index_sequence | GCAAGAT |
| p5_library_oligo_sequence | AATGATACGGCGACCACCGAGATCTACACatcttgcACACTCTTTCCCTACACGACGCTCTT |
| p7_library_index_id | 83.0 |
| p7_library_index_sequence | TTCTAGG |
| p7_library_oligo_sequence | CAAGCAGAAGACGGCATACGAGATcctagaaGTGACTGGAGTTCAGACGTGT |
| phylum | Chordata |
| prior_genetics | VWF | RAG1 | BRCA1 |
| sample_quality | unknown |
| sample_submission_date | 2020-12-07 |
| sequence_length | 100bp PE |
| sequencing_facility | BRF |
| sequencing_platform | Illumina NovaSeq SP 200 cycle |
| sex | not determined |
| source_population | unknown |
| species | obesulus |
| species_name | Isoodon obesulus |
| state_or_region | South Australia |
| subspecies_or_variant | nauticus |
| taxon_id | 120741 |
| taxonomic_group | marsupial |
| ticket | BPAOPS-1014 |
| tissue_collection | Mammal |
| tissue_number | ABTC26723 |
| tissue_preservation | frozen |
| tissue_type | liver |
| trace_lab | no |
| type_status | unknown |
| voucher_number | SAMA M12292 |
| voucher_or_tissue_number | SAMA M12292 |
| wild_captive | wild |