Desert bettong, Phylogenomics, exon capture, skin
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
| Access Control Date | 2021-12-07 |
| Access Control Mode | date |
| Sequence Data Type | illumina-exoncapture |
| access_rights | no restrictions |
| ala_specimen_url | NA |
| ancillary_notes | Lat/longs on data tag are no where near Kurara Mine, location estimated using Google Earth. ID by Umbrello L.S. in 2013 as B. lesueur graii. Then Identified by Ken Aplin after the publication on B. anhydra. |
| archive_ingestion_date | 2020-12-10 |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/exon_capture/brf/BPAOPS-1011/ |
| birth_date | unknown |
| bpa_dataset_id | 102.100.100/52637 |
| bpa_library_id | 102.100.100/363997 |
| bpa_sample_id | 102.100.100/40259 |
| bpa_work_order | 40071 |
| class | Mammalia |
| collection_date | 1964-01-05 |
| collection_method | pick up |
| collector | W Harry Butler |
| collector_sample_id | B468 |
| common_name | Desert bettong |
| coord_uncertainty_metres | 60 |
| country | Australia |
| custodian | Kenny Travouillon |
| data_custodian | Mark Eldridge |
| data_generated | 2020-12-10 |
| data_type | Illumina FASTQ |
| date_of_transfer | 2020-12-07 |
| ddrad_data | no |
| ddrad_dataset_ids | NA |
| death_date | unknown |
| description | Novaseq 6000 A00548_0129_AMacDonald_52637_Marsupial_gDNA |
| dna_conc_ng_ul | 1.59 |
| dna_extracted_by | Anna MacDonald |
| dna_extraction_date | 2017-09-04 |
| dna_extraction_method | Qiagen DNEasy modified for trace samples |
| dna_treatment | not sheared |
| exon_capture_data | yes |
| exon_capture_dataset_ids | 52637 | 52584 |
| experimental_design | Nimblegen Exon Capture, methods for trace samples, marsupial probes V2, dual indexed |
| facility | brf |
| facility_sample_id | 363997_BHV5KMDRXX_GACGGCG |
| family | Potoroidae |
| flowcell_id | BHV5KMDRXX |
| folder_name | A00548_0129_AMacDonald_52637_Marsupial_gDNA.tar |
| genome_data | no |
| genome_dataset_ids | NA |
| genus | Bettongia |
| habitat | Ochre mine |
| identified_by | Ken Aplin |
| institution_name | Western Australian Museum |
| latitude | -26.99 |
| library_comments | library ng/µL for 200-1000 bp range |
| library_location | ANU EBL |
| library_ng_ul | 9.7892034084 |
| library_pcr_cycles | 15.0 |
| library_pcr_reps | 2.0 |
| library_prep_date | 2020-10-27 |
| library_prep_method | Meyer and Kircher protocol |
| library_prepared_by | Anna MacDonald |
| library_status | Submitted for sequencing |
| library_type | exon capture |
| life_stage | juvenile stage |
| location_generalisation | 1km |
| location_text | Kurara Mine, Kurara Homestead |
| longitude | 118.36 |
| n_libraries_pooled | 192 |
| omg_project | Phylogenomics |
| order | Diprotodontia |
| p5_library_index_id | 09 |
| p5_library_index_sequence | ACCAACT |
| p5_library_oligo_sequence | AATGATACGGCGACCACCGAGATCTACACagttggtACACTCTTTCCCTACACGACGCTCTT |
| p7_library_index_id | 62.0 |
| p7_library_index_sequence | GACGGCG |
| p7_library_oligo_sequence | CAAGCAGAAGACGGCATACGAGATcgccgtcGTGACTGGAGTTCAGACGTGT |
| phylum | Chordata |
| prior_genetics | unknown |
| sample_quality | unknown |
| sample_submission_date | 2020-12-07 |
| sequence_length | 100bp PE |
| sequencing_facility | BRF |
| sequencing_platform | Illumina NovaSeq SP 200 cycle |
| sex | not determined |
| source_population | unknown |
| species | anhydra |
| species_name | Bettongia anhydra |
| state_or_region | Western Australia |
| subspecies_or_variant | NA |
| taxon_id | 1636722 |
| taxonomic_group | marsupial |
| ticket | BPAOPS-1011 |
| tissue_collection | Mammal |
| tissue_number | WAM M54130 |
| tissue_preservation | dried |
| tissue_type | skin |
| trace_lab | yes |
| type_status | unknown |
| voucher_number | WAM M54130 |
| voucher_or_tissue_number | WAM M54130 |
| wild_captive | unknown |