Boodie | burrowing bettong, Phylogenomics, exon capture, skin
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
| Access Control Date | 2021-12-16 |
| Access Control Mode | date |
| Sequence Data Type | illumina-exoncapture |
| access_rights | unknown |
| ala_specimen_url | NA |
| ancillary_notes | Extinct mainland population |
| archive_ingestion_date | 2020-12-16 |
| associated_media | unknown |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/exon_capture/brf/BPAOPS-1017/ |
| birth_date | unknown |
| bpa_dataset_id | 102.100.100/52639 |
| bpa_library_id | 102.100.100/364064 |
| bpa_sample_id | 102.100.100/361893 |
| bpa_work_order | 40073 |
| class | Mammalia |
| collection_date | unknown |
| collection_method | unknown |
| collector | unknown |
| collector_sample_id | unknown |
| common_name | Boodie | burrowing bettong |
| coord_uncertainty_metres | NA |
| country | unknown |
| custodian | Mark Eldridge | Australian Museum |
| data_custodian | Mark Eldridge |
| data_generated | 2020-12-16 |
| data_type | Illumina FASTQ |
| date_of_transfer | 2020-12-16 |
| ddrad_data | no |
| ddrad_dataset_ids | NA |
| death_date | unknown |
| description | Novaseq 6000 A00548_0137_AMacDonald_52639_Marsupial_gDNA |
| dna_conc_ng_ul | 0.302 |
| dna_extracted_by | Anna MacDonald |
| dna_extraction_date | 2020-11-09 |
| dna_extraction_method | Qiagen DNEasy modified for trace samples |
| dna_treatment | not sheared |
| exon_capture_data | yes |
| exon_capture_dataset_ids | 52639.0 |
| experimental_design | Nimblegen Exon Capture, methods for trace samples, marsupial probes V2, dual indexed |
| facility | brf |
| facility_sample_id | 364064_AHY7JTDRXX_CATCCGG |
| family | Potoroidae |
| flowcell_id | AHY7JTDRXX |
| folder_name | A00548_0137_AMacDonald_52639_Marsupial_gDNA |
| genome_data | no |
| genome_dataset_ids | NA |
| genus | Bettongia |
| habitat | unknown |
| identified_by | unknown |
| institution_name | Australian Museum |
| library_location | ANU EBL |
| library_ng_ul | 0.4764638944 |
| library_pcr_cycles | 16.0 |
| library_pcr_reps | 2.0 |
| library_prep_date | 2020-11-30 |
| library_prep_method | Meyer and Kircher protocol |
| library_prepared_by | Anna MacDonald |
| library_status | Submitted for sequencing |
| library_type | exon capture |
| life_stage | not determined |
| location_text | unknown |
| n_libraries_pooled | 224 |
| omg_project | Phylogenomics |
| order | Diprotodontia |
| p5_library_index_id | 11.0 |
| p5_library_index_sequence | AACTCCG |
| p5_library_oligo_sequence | AATGATACGGCGACCACCGAGATCTACACcggagttACACTCTTTCCCTACACGACGCTCTT |
| p7_library_index_id | 33.0 |
| p7_library_index_sequence | CATCCGG |
| p7_library_oligo_sequence | CAAGCAGAAGACGGCATACGAGATccggatgGTGACTGGAGTTCAGACGTGT |
| phylum | Chordata |
| prior_genetics | unknown |
| sample_quality | unknown |
| sample_submission_date | 2020-12-16 |
| sequence_length | 100bp PE |
| sequencing_facility | BRF |
| sequencing_platform | Illumina NovaSeq SP 200 cycle |
| sex | not determined |
| source_population | unknown |
| species | lesueur |
| state_or_region | unknown |
| subspecies_or_variant | NA |
| taxon_id | 65621 |
| taxonomic_group | marsupial |
| ticket | BPAOPS-1017 |
| tissue_collection | Mammalogy |
| tissue_number | AM A.16792 |
| tissue_preservation | dried |
| tissue_type | skin |
| trace_lab | yes |
| type_status | unknown |
| voucher_number | AM A.16792 |
| voucher_or_tissue_number | AM A.16792 |
| wild_captive | unknown |