Common Brushtail possum, Marsupial phylogenetics, Exon Capture, kidney
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
| Access Control Date | 2022-02-11 |
| Access Control Mode | date |
| Sequence Data Type | illumina-exoncapture |
| access_rights | unknown |
| ala_specimen_url | NA |
| ancillary_notes | Taxon=Phalangeridae: Trichosurus vulpecula; Other notes: The form of object was marked as 'skull, skin' in EMu, however the skull was not sighted and the tag on the skin has skin ticked, but not the skull. Perhaps the skull was meant to be prepared, but it never was returned to the collection in the first place (there is no further information in the registration data sheets). The record has been modified to fit this, and can be adjusted if the skull ever shows up (Note written: 18/09/2013). |
| archive_ingestion_date | 2021-02-12 |
| associated_media | unknown |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/exon_capture/brf/BPAOPS-1031/ |
| birth_date | unknown |
| bpa_dataset_id | 102.100.100/52646 |
| bpa_library_id | 102.100.100/364338 |
| bpa_sample_id | 102.100.100/362176 |
| bpa_work_order | 40074 |
| class | Mammalia |
| collection_date | 1990-09-15 |
| collection_method | unknown |
| collector | Tim F Flannery |
| collector_sample_id | unknown |
| common_name | Common Brushtail possum |
| coord_uncertainty_metres | NA |
| country | Australia |
| custodian | Mark Eldridge | Australian Museum |
| data_custodian | Mark Eldridge |
| data_generated | 2021-02-12 |
| data_type | Illumina FASTQ |
| date_of_transfer | 2021-02-11 |
| ddrad_data | no |
| ddrad_dataset_ids | NA |
| death_date | unknown |
| description | Novaseq 6000 A00548_0147_LBroady_52646_Marsupial_gDNA |
| dna_conc_ng_ul | 34.7 | sample diluted 1:10 as original conc was too high |
| dna_extracted_by | Liz Broady |
| dna_extraction_date | 2020-09-24 |
| dna_extraction_method | salting out |
| dna_treatment | 22 biorupter cycles |
| exon_capture_data | yes |
| exon_capture_dataset_ids | 52646.0 |
| experimental_design | Nimblegen Exon Capture, marsupial probes V2, dual indexed |
| facility | brf |
| facility_sample_id | 364338_BHYCGCDRXX_GAATCTC |
| family | Phalangeridae |
| flowcell_id | BHYCGCDRXX |
| folder_name | A00548_0147_LBroady_52646_Marsupial_gDNA |
| genome_data | no |
| genome_dataset_ids | NA |
| genus | Trichosurus |
| habitat | unknown |
| identified_by | unknown |
| institution_name | Australian Museum |
| library_comments | qPCR indicates that target capture and enrichment was successful |
| library_location | EBL main freezer |
| library_ng_ul | 18.6 |
| library_pcr_cycles | 12.0 |
| library_pcr_reps | 2.0 |
| library_prep_date | 2021-01-05 |
| library_prep_method | Meyer and Kircher protocol |
| library_prepared_by | Liz Broady |
| library_status | Ready for sequencing |
| library_type | Exon Capture |
| life_stage | not determined |
| location_text | Charamillan Creek, Tully Falls Road. |
| n_libraries_pooled | 288 |
| omg_project | Marsupial phylogenetics |
| order | Diprotodontia |
| p5_library_index_id | P5_indexing24 |
| p5_library_index_sequence | CAATATG |
| p5_library_oligo_sequence | AATGATACGGCGACCACCGAGATCTACACcatattgACACTCTTTCCCTACACGACGCTCTT |
| p7_library_index_id | P7_indexing19 |
| p7_library_index_sequence | GAATCTC |
| p7_library_oligo_sequence | CAAGCAGAAGACGGCATACGAGATgagattcGTGACTGGAGTTCAGACGTGT |
| phylum | Chordata |
| prior_genetics | unknown |
| sample_quality | unknown |
| sample_submission_date | 2021-02-11 |
| sequence_length | 100bp PE |
| sequencing_facility | BRF |
| sequencing_platform | Illumina NovaSeq SP 200 cycle |
| sex | male |
| software_version | unknown |
| source_population | unknown |
| species | vulpecula |
| species_name | Trichosurus vulpecula |
| state_or_region | Queensland |
| subspecies_or_variant | johnstonii |
| taxon_id | 9337 |
| taxonomic_group | marsupial |
| ticket | BPAOPS-1031 |
| tissue_collection | Mammalogy |
| tissue_number | EBU 13145 |
| tissue_preservation | unknown |
| tissue_type | kidney |
| trace_lab | no |
| type_status | unknown |
| voucher_number | AM M.23000.001 |
| voucher_or_tissue_number | AM M.23000.001 |
| wild_captive | unknown |