Northern quoll, Marsupial phylogenetics, Exon Capture, muscle
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
| Access Control Date | 2022-02-11 |
| Access Control Mode | date |
| Sequence Data Type | illumina-exoncapture |
| access_rights | unknown |
| ala_specimen_url | NA |
| ancillary_notes | Found in an open area near administration building with small cut on belly. Gut area open and decomposing, cut/dent on cranium between ears. No other sign of injury. Small testes |
| archive_ingestion_date | 2021-02-12 |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/exon_capture/brf/BPAOPS-1032/ |
| birth_date | unknown |
| bpa_dataset_id | 102.100.100/52647 |
| bpa_library_id | 102.100.100/364507 |
| bpa_sample_id | 102.100.100/362337 |
| bpa_work_order | 40074 |
| class | Mammalia |
| collection_date | unknown |
| collection_method | pick up |
| collector | J Roberts |
| collector_sample_id | unknown |
| common_name | Northern quoll |
| coord_uncertainty_metres | NA |
| country | Australia |
| custodian | Kenny Travouillon |
| data_custodian | Mark Eldridge |
| data_generated | 2021-02-12 |
| data_type | Illumina FASTQ |
| date_of_transfer | 2021-02-11 |
| ddrad_data | no |
| ddrad_dataset_ids | NA |
| death_date | unknown |
| description | Novaseq 6000 A00548_0147_LBroady_52647_Marsupial_gDNA |
| dna_conc_ng_ul | too low |
| dna_extracted_by | Liz Broady |
| dna_extraction_date | 2020-11-16 |
| dna_extraction_method | salting out |
| dna_treatment | 10 biorupter cycles |
| exon_capture_data | yes |
| exon_capture_dataset_ids | 52647.0 |
| experimental_design | Nimblegen Exon Capture, marsupial probes V2, dual indexed |
| facility | brf |
| facility_sample_id | 364507_BHYCGCDRXX_GTCCGGC |
| family | Dasyuridae |
| flowcell_id | BHYCGCDRXX |
| folder_name | A00548_0147_LBroady_52647_Marsupial_gDNA |
| genome_data | no |
| genome_dataset_ids | NA |
| genus | Dasyurus |
| habitat | Grassy slope |
| identified_by | L S Umbrello |
| institution_name | Western Australian Museum |
| library_comments | qPCR results indicate that the target capture and enrichment was successful |
| library_location | EBL main freezer |
| library_ng_ul | 94.2 |
| library_pcr_cycles | 12.0 |
| library_pcr_reps | 2.0 |
| library_prep_date | 2021-01-11 |
| library_prep_method | Meyer and Kircher protocol |
| library_prepared_by | Liz Broady |
| library_status | Ready for sequencing |
| library_type | Exon Capture |
| life_stage | sub-adult organism |
| location_generalisation | 1km |
| location_text | Port Hedland, BHP Yarrie Minesite, 240km NE Port Hedland |
| n_libraries_pooled | 288 |
| omg_project | Marsupial phylogenetics |
| order | Dasyuromorphia |
| p5_library_index_id | P5_indexing16 |
| p5_library_index_sequence | TAATGCG |
| p5_library_oligo_sequence | AATGATACGGCGACCACCGAGATCTACACcgcattaACACTCTTTCCCTACACGACGCTCTT |
| p7_library_index_id | P7_indexing64 |
| p7_library_index_sequence | GTCCGGC |
| p7_library_oligo_sequence | CAAGCAGAAGACGGCATACGAGATgccggacGTGACTGGAGTTCAGACGTGT |
| phylum | Chordata |
| prior_genetics | unknown |
| sample_quality | unknown |
| sample_submission_date | 2021-02-11 |
| sequence_length | 100bp PE |
| sequencing_facility | BRF |
| sequencing_platform | Illumina NovaSeq SP 200 cycle |
| sex | male |
| software_version | unknown |
| source_population | unknown |
| species | hallucatus |
| species_name | Dasyurus hallucatus |
| state_or_region | Western Australia |
| subspecies_or_variant | Pilbara |
| taxon_id | 9280 |
| taxonomic_group | marsupial |
| ticket | BPAOPS-1032 |
| tissue_collection | Mammal |
| tissue_number | WAM M62833 |
| tissue_preservation | wet |
| tissue_type | muscle |
| trace_lab | no |
| type_status | unknown |
| voucher_number | WAM M62833 |
| voucher_or_tissue_number | WAM M62833 |
| wild_captive | unknown |