Lesser Ranee Mouse, Conservation Genomics, exon capture, skull scraping
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
| Access Control Date | 2022-05-05 |
| Access Control Mode | date |
| Sequence Data Type | illumina-exoncapture |
| access_rights | Data and tissues embargoed |
| ala_specimen_url | unknown |
| ancillary_notes | unknown |
| archive_ingestion_date | 2021-05-11 |
| associated_media | unknown |
| barcode_id | unknown |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/exon_capture/brf/BPAOPS-1067/ |
| birth_date | unknown |
| bpa_dataset_id | 102.100.100/52652 |
| bpa_library_id | 102.100.100/364514 |
| bpa_sample_id | 102.100.100/362354 |
| class | Mammalia |
| collection_date | 2014-12-23 |
| collection_method | unknown |
| collector | unknown |
| collector_sample_id | NA |
| common_name | Lesser Ranee Mouse |
| coord_uncertainty_metres | NA |
| country | Indonesia |
| custodian | Anang S Achmadi |
| data_custodian | Kevin Rowe |
| data_generated | 2021-05-11 |
| data_type | Illumina FASTQ |
| date_of_transfer | 2021-05-05 |
| ddrad_data | no |
| ddrad_dataset_ids | NA |
| death_date | unknown |
| description | Novaseq 6000 A00548_0171_ERoycroft_OzMammals_52652_Rodent_gDNA |
| dna_conc_ng_ul | 3.7063636364 |
| dna_extracted_by | Kevin C Rowe |
| dna_extraction_date | 2021-01-14 |
| dna_extraction_method | Phenol-Chloroform-Isoamyl |
| dna_treatment | 0 bioruptor cycles |
| exon_capture_data | yes |
| exon_capture_dataset_ids | 52652.0 |
| experimental_design | Nimblegen Exon Capture – dual index |
| facility | brf |
| facility_sample_id | 364514_BH5MNMDRXY_CTCGATG |
| family | Muridae |
| flowcell_id | BH5MNMDRXY |
| folder_name | A00548_0171_ERoycroft_OzMammals_52652_Rodent_gDNA |
| genome_data | no |
| genome_dataset_ids | NA |
| genus | Haeromys |
| habitat | Unknown |
| identified_by | Kevin C Rowe |
| institution_name | Musuem Zoologicum Bogoriense |
| library_comments | library ng/µL for 200-800 bp range |
| library_location | ANU EBL |
| library_ng_ul | 0.1852396737 |
| library_pcr_cycles | 14.0 |
| library_pcr_reps | 2.0 |
| library_prep_date | 2021-03-22 |
| library_prep_method | Meyer and Kircher protocol |
| library_prepared_by | Kevin Rowe |
| library_status | Submitted for sequencing |
| library_type | exon capture |
| life_stage | not determined |
| location_text | Sungai hapai, Desa Kelekat, Kecamatan Kembang Janggut, Kabupaten Kutai Kartanegara |
| n_libraries_pooled | 80 |
| omg_project | Conservation Genomics |
| order | Rodentia |
| p5_library_index_id | 04 |
| p5_library_index_sequence | GGATCAA |
| p5_library_oligo_sequence | AATGATACGGCGACCACCGAGATCTACACttgatccACACTCTTTCCCTACACGACGCTCTT |
| p7_library_index_id | 07 |
| p7_library_index_sequence | CTCGATG |
| p7_library_oligo_sequence | CAAGCAGAAGACGGCATACGAGATcatcgagGTGACTGGAGTTCAGACGTGT |
| phylum | Chordata |
| prior_genetics | unknown |
| sample_quality | degraded |
| sample_submission_date | 2021-05-05 |
| sequence_length | 100bp PE |
| sequencing_facility | BRF |
| sequencing_platform | Illumina NovaSeq SP 200 cycle |
| sex | not determined |
| source_population | NA |
| species | pusillus |
| state_or_region | East Kalimantan |
| subspecies_or_variant | NA |
| taxon_id | 2683854 |
| taxonomic_group | rodent |
| ticket | BPAOPS-1067 |
| tissue_collection | Musuem Zoologicum Bogoriense |
| tissue_number | MZB 39327 |
| tissue_preservation | dry |
| tissue_type | skull scraping |
| trace_lab | yes |
| voucher_number | MZB 39327 |
| voucher_or_tissue_number | MZB 39327 |
| wild_captive | wild |