Bolam's mouse, Conservation Genomics, exon capture, liver

Muridae, Pseudomys bolami, ABTC 89215, rodent, Project Lead: Kevin Rowe

Dataset size is: 0.00 Bit

Log in or Register to access resource
 
 

 

Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members
Access Control Date 2022-05-05
Access Control Mode date
Sequence Data Type illumina-exoncapture
access_rights No restrictions
ala_specimen_url unknown
ancillary_notes unknown
archive_ingestion_date 2021-05-11
associated_media unknown
barcode_id unknown
base_url https://downloads-qcif.bioplatforms.com/bpa/omg_staging/exon_capture/brf/BPAOPS-1067/
birth_date unknown
bpa_dataset_id 102.100.100/52652
bpa_library_id 102.100.100/364565
bpa_sample_id 102.100.100/362405
class Mammalia
collection_date 1999-07-19
collection_method unknown
collector Travis How | EBS
collector_sample_id NA
common_name Bolam's mouse
coord_uncertainty_metres 1000.0
country Australia
custodian Steve Donnellan
data_custodian Kevin Rowe
data_generated 2021-05-11
data_type Illumina FASTQ
date_of_transfer 2021-05-05
ddrad_data no
ddrad_dataset_ids NA
death_date unknown
description Novaseq 6000 A00548_0171_ERoycroft_OzMammals_52652_Rodent_gDNA
dna_conc_ng_ul 15.0143636364
dna_extracted_by Emily Roycroft
dna_extraction_date 2018-10-01
dna_extraction_method Qiagen DNEasy
dna_treatment 16 bioruptor cycles
exon_capture_data yes
exon_capture_dataset_ids 52652.0
experimental_design Nimblegen Exon Capture – dual index
facility brf
facility_sample_id 364565_BH5MNMDRXY_GCCTACG
family Muridae
flowcell_id BH5MNMDRXY
folder_name A00548_0171_ERoycroft_OzMammals_52652_Rodent_gDNA
genome_data no
genome_dataset_ids NA
genus Pseudomys
habitat Unknown
identified_by Travis How | EBS
institution_name South Australian Museum
latitude -32.1022
library_comments library ng/µL for 200-800 bp range
library_location ANU EBL
library_ng_ul 2.4325659173
library_pcr_cycles 12.0
library_pcr_reps 2.0
library_prep_date 2021-03-22
library_prep_method Meyer and Kircher protocol
library_prepared_by Kevin Rowe
library_status Submitted for sequencing
library_type exon capture
life_stage not determined
location_text 8.5 km SE, Olary Spur,Bimbowrie Homestead
longitude 140.2175
n_libraries_pooled 80
omg_project Conservation Genomics
order Rodentia
p5_library_index_id 04
p5_library_index_sequence GGATCAA
p5_library_oligo_sequence AATGATACGGCGACCACCGAGATCTACACttgatccACACTCTTTCCCTACACGACGCTCTT
p7_library_index_id 67
p7_library_index_sequence GCCTACG
p7_library_oligo_sequence CAAGCAGAAGACGGCATACGAGATcgtaggcGTGACTGGAGTTCAGACGTGT
phylum Chordata
prior_genetics unknown
sample_quality good
sample_submission_date 2021-05-05
sequence_length 100bp PE
sequencing_facility BRF
sequencing_platform Illumina NovaSeq SP 200 cycle
sex not determined
source_population NA
species bolami
species_name Pseudomys bolami
state_or_region South Australia
subspecies_or_variant NA
taxon_id 442605
taxonomic_group rodent
ticket BPAOPS-1067
tissue_collection South Australian Museum
tissue_number ABTC 89215
tissue_preservation frozen
tissue_type liver
trace_lab no
voucher_number SAMA M25208
voucher_or_tissue_number ABTC 89215
wild_captive wild