Black-footed tree-rat, Conservation Genomics, exon capture, ear epithelium
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Data and Resources
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
| Access Control Date | 2022-05-05 |
| Access Control Mode | date |
| Sequence Data Type | illumina-exoncapture |
| access_rights | No restrictions |
| ala_specimen_url | unknown |
| ancillary_notes | unknown |
| archive_ingestion_date | 2021-05-11 |
| associated_media | unknown |
| barcode_id | unknown |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/exon_capture/brf/BPAOPS-1067/ |
| birth_date | unknown |
| bpa_dataset_id | 102.100.100/52652 |
| bpa_library_id | 102.100.100/364576 |
| bpa_sample_id | 102.100.100/362416 |
| class | Mammalia |
| collection_date | unknown |
| collection_method | unknown |
| collector | Cara Penton |
| collector_sample_id | AL21 |
| common_name | Black-footed tree-rat |
| coord_uncertainty_metres | 10000.0 |
| country | Australia |
| custodian | Sam Banks |
| data_custodian | Kevin Rowe |
| data_generated | 2021-05-11 |
| data_type | Illumina FASTQ |
| date_of_transfer | 2021-05-05 |
| ddrad_data | no |
| ddrad_dataset_ids | NA |
| death_date | unknown |
| description | Novaseq 6000 A00548_0171_ERoycroft_OzMammals_52652_Rodent_gDNA |
| dna_conc_ng_ul | 4.5909090909 |
| dna_extracted_by | unknown |
| dna_extraction_date | unknown |
| dna_extraction_method | unknown |
| dna_treatment | 28 bioruptor cycles |
| exon_capture_data | yes |
| exon_capture_dataset_ids | 52652.0 |
| experimental_design | Nimblegen Exon Capture – dual index |
| facility | brf |
| facility_sample_id | 364576_BH5MNMDRXY_AATAAGC |
| family | Muridae |
| flowcell_id | BH5MNMDRXY |
| folder_name | A00548_0171_ERoycroft_OzMammals_52652_Rodent_gDNA |
| genome_data | no |
| genome_dataset_ids | NA |
| genus | Mesembriomys |
| habitat | Unknown |
| identified_by | Cara Penton |
| institution_name | Charles Darwin University |
| latitude | -11.6 |
| library_comments | library ng/µL for 200-800 bp range |
| library_location | ANU EBL |
| library_ng_ul | 2.6853172402 |
| library_pcr_cycles | 12.0 |
| library_pcr_reps | 2.0 |
| library_prep_date | 2021-03-22 |
| library_prep_method | Meyer and Kircher protocol |
| library_prepared_by | Kevin Rowe |
| library_status | Submitted for sequencing |
| library_type | exon capture |
| life_stage | not determined |
| location_text | Melville Island |
| longitude | 130.817 |
| n_libraries_pooled | 80 |
| omg_project | Conservation Genomics |
| order | Rodentia |
| p5_library_index_id | 02 |
| p5_library_index_sequence | CTCTGCA |
| p5_library_oligo_sequence | AATGATACGGCGACCACCGAGATCTACACtgcagagACACTCTTTCCCTACACGACGCTCTT |
| p7_library_index_id | 77.0 |
| p7_library_index_sequence | AATAAGC |
| p7_library_oligo_sequence | CAAGCAGAAGACGGCATACGAGATgcttattGTGACTGGAGTTCAGACGTGT |
| phylum | Chordata |
| prior_genetics | unknown |
| sample_quality | good |
| sample_submission_date | 2021-05-05 |
| sequence_length | 100bp PE |
| sequencing_facility | BRF |
| sequencing_platform | Illumina NovaSeq SP 200 cycle |
| sex | not determined |
| source_population | NA |
| species | gouldii |
| species_name | Mesembriomys gouldii |
| state_or_region | Northern Territory |
| subspecies_or_variant | NA |
| taxon_id | 337228 |
| taxonomic_group | rodent |
| ticket | BPAOPS-1067 |
| tissue_collection | Charles Darwin University |
| tissue_number | AL21 |
| tissue_preservation | ethanol | frozen |
| tissue_type | ear epithelium |
| trace_lab | no |
| voucher_number | CDU BFTR109 |
| voucher_or_tissue_number | CDU BFTR109 |
| wild_captive | wild |