D'Albertis' ringtail possum, Phylogenomics, exon capture, liver
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Data and Resources
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
| Access Control Date | 2018-05-05 |
| Access Control Mode | date |
| Sequence Data Type | illumina-exoncapture |
| access_rights | check with home country cusodians for reuse |
| ala_specimen_url | NA |
| ancillary_notes | NA |
| archive_ingestion_date | 2017-05-15 |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/exon_capture/brf/BPAOPS-135/ |
| birth_date | unknown |
| bpa_dataset_id | 102.100.100/40067 |
| bpa_library_id | 102.100.100/52731 |
| bpa_sample_id | 102.100.100/40100 |
| bpa_work_order | 40003 |
| class | Mammalia |
| collection_date | 1988-06-06 |
| collection_method | unknown |
| collector | Tim F Flannery |
| collector_sample_id | FE70 |
| common_name | D'Albertis' ringtail possum |
| coord_uncertainty_metres | unknown |
| country | Papua New Guinea |
| custodian | Mark Eldridge | Australian Museum |
| data_custodian | Mark Eldridge |
| data_generated | 2017-05-15 |
| data_type | Illumina FASTQ |
| dataset_url | https://data.bioplatforms.com/organization/bpa-omg?q=%22BPAOPS-135%22&sort=score+desc%2C+metadata_modified+desc |
| date_of_transfer | 2017-05-05 |
| ddrad_data | no |
| ddrad_dataset_ids | NA |
| death_date | unknown |
| description | HiSeq 2500 100bp PE - exon capture pool 102.100.100/40067 (samples 102.100.100/40069-40124) |
| dna_conc_ng_ul | 86.47 |
| dna_extracted_by | Anna MacDonald |
| dna_extraction_date | 2017-03-07 |
| dna_extraction_method | salting out |
| dna_treatment | 10 bioruptor cycles |
| exon_capture_data | yes |
| exon_capture_dataset_ids | 40067 | 52584 |
| experimental_design | Nimblegen Exon Capture - single index |
| facility | brf |
| facility_sample_id | 52731_BHLFLYBCXY_TCATGGT |
| family | Pseudocheiridae |
| file | 52731_BHLFLYBCXY_TCATGGT_S32_L001_R1_001.fastq.gz |52731_BHLFLYBCXY_TCATGGT_S32_L001_R2_001.fastq.gz |52731_BHLFLYBCXY_TCATGGT_S32_L002_R1_001.fastq.gz |52731_BHLFLYBCXY_TCATGGT_S32_L002_R2_001.fastq.gz |
| flowcell_id | BHLFLYBCXY |
| folder_name | SN877_0482_AMacDonald_JCSMR_Marsupial_gDNA_exon_capture |
| genome_data | no |
| genome_dataset_ids | NA |
| genus | Pseudochirops |
| habitat | unknown |
| identified_by | unknown |
| institution_name | Australian Museum |
| library_comments | NA |
| library_location | ANU EBL |
| library_ng_ul | 21.5 |
| library_pcr_cycles | 12.0 |
| library_pcr_reps | 2.0 |
| library_prep_date | 2017-03-16 |
| library_prep_method | Meyer and Kircher protocol |
| library_prepared_by | Anna MacDonald |
| library_status | Data available |
| library_type | exon capture |
| life_stage | adult organism |
| location_text | Lower Camp Mt Somoro, Torricelli Mountains |
| n_libraries_pooled | 56 |
| omg_project | Phylogenomics |
| order | Diprotodontia |
| p7_library_index_id | 34.0 |
| p7_library_index_sequence | TCATGGT |
| p7_library_oligo_sequence | CAAGCAGAAGACGGCATACGAGATaccatgaGTGACTGGAGTTCAGACGTGT |
| phylum | Chordata |
| prior_genetics | unknown |
| sample_quality | unknown |
| sample_submission_date | 2017-05-05 |
| sequence_length | 100bp PE |
| sequencing_facility | BRF |
| sequencing_platform | Illumina HiSeq 2500 RAPID |
| sex | female |
| software_version | unknown |
| source_population | unknown |
| species | albertisii |
| state_or_region | West Sepik Province |
| subspecies_or_variant | schultzei |
| taxon_id | 699040 |
| taxonomic_group | marsupial |
| ticket | BPAOPS-135 |
| tissue_collection | Mammalogy |
| tissue_number | EBU26429 |
| tissue_preservation | frozen |
| tissue_type | liver |
| trace_lab | no |
| type_status | unknown |
| voucher_number | AM M.20146.003 |
| voucher_or_tissue_number | AM M.20146.003 |
| wild_captive | wild |