Desert bettong, Phylogenomics, exon capture, skin
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
| Access Control Date | 2019-02-02 |
| Access Control Mode | date |
| Sequence Data Type | illumina-exoncapture |
| access_rights | no restrictions |
| ala_specimen_url | NA |
| ancillary_notes | Lat/longs on data tag are no where near Kurara Mine, location estimated using Google Earth. ID by Umbrello L.S. in 2013 as B. lesueur graii. Then Identified by Ken Aplin after the publication on B. anhydra. |
| archive_ingestion_date | 2018-02-02 |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/exon_capture/brf/BPAOPS-508/ |
| birth_date | unknown |
| bpa_dataset_id | 102.100.100/52584 |
| bpa_library_id | 102.100.100/52881 |
| bpa_sample_id | 102.100.100/40259 |
| bpa_work_order | 40010 |
| class | Mammalia |
| collection_date | 1964-01-05 |
| collection_method | pick up |
| collector | W Harry Butler |
| collector_sample_id | B468 |
| common_name | Desert bettong |
| coord_uncertainty_metres | 60 |
| country | Australia |
| custodian | Kenny Travouillon |
| data_custodian | Mark Eldridge |
| data_generated | 2018-02-02 |
| data_type | Illumina FASTQ |
| dataset_url | https://data.bioplatforms.com/organization/dbaf22b0-0e9b-4b14-b405-9fc4d9181975?q=BPAOPS-508&sort=score+desc%2C+metadata_modified+desc |
| date_of_transfer | 2018-02-02 |
| ddrad_data | no |
| ddrad_dataset_ids | NA |
| death_date | unknown |
| description | HiSeq 2500 100bp PE - exon capture marsupial |
| dna_conc_ng_ul | 1.59 |
| dna_extracted_by | Anna MacDonald |
| dna_extraction_date | 2017-09-04 |
| dna_extraction_method | Qiagen DNEasy modified for trace samples |
| dna_treatment | NA |
| exon_capture_data | yes |
| exon_capture_dataset_ids | 52637 | 52584 |
| experimental_design | Nimblegen Exon Capture - single index - marsupial V1 |
| facility | brf |
| facility_sample_id | 52881_AH5VVVBCX2_TACTTAG |
| family | Potoroidae |
| file | 52881_AH5VVVBCX2_TACTTAG_S60_R1_001.fastq.gz | 52881_AH5VVVBCX2_TACTTAG_S60_R2_001.fastq.gz |
| flowcell_id | AH5VVVBCX2 |
| folder_name | SN877_0531_AMacDonald_OzMammals_Marsupials_gDNA_capture |
| genome_data | no |
| genome_dataset_ids | NA |
| genus | Bettongia |
| habitat | Ochre mine |
| identified_by | Ken Aplin |
| institution_name | Western Australian Museum |
| latitude | -26.99 |
| library_comments | NA |
| library_location | ANU EBL |
| library_ng_ul | 21.9778362183 |
| library_pcr_cycles | 14.0 |
| library_pcr_reps | 2.0 |
| library_prep_date | 2017-11-09 |
| library_prep_method | Meyer and Kircher protocol |
| library_prepared_by | Anna MacDonald |
| library_status | Data available |
| library_type | exon capture |
| life_stage | juvenile stage |
| location_generalisation | 1km |
| location_text | Kurara Mine, Kurara Homestead |
| longitude | 118.36 |
| n_libraries_pooled | 96 |
| omg_project | Phylogenomics |
| order | Diprotodontia |
| p7_library_index_id | 60.0 |
| p7_library_index_sequence | TACTTAG |
| p7_library_oligo_sequence | CAAGCAGAAGACGGCATACGAGATctaagtaGTGACTGGAGTTCAGACGTGT |
| phylum | Chordata |
| prior_genetics | unknown |
| sample_quality | unknown |
| sample_submission_date | 2018-02-02 |
| sequence_length | 100bp PE |
| sequencing_facility | BRF |
| sequencing_platform | Illumina HiSeq 2500 RAPID |
| sex | not determined |
| software_version | unknown |
| source_population | unknown |
| species | anhydra |
| species_name | Bettongia anhydra |
| state_or_region | Western Australia |
| subspecies_or_variant | NA |
| taxon_id | 1636722 |
| taxonomic_group | marsupial |
| ticket | BPAOPS-508 |
| tissue_collection | Mammal |
| tissue_number | WAM M54130 |
| tissue_preservation | dried |
| tissue_type | skin |
| trace_lab | yes |
| type_status | unknown |
| voucher_number | WAM M54130 |
| voucher_or_tissue_number | WAM M54130 |
| wild_captive | unknown |