Tasmanian long-eared bat, Bat phylogenomics, exon capture, kidney
Dataset size is: 0.00 Bit
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
| Access Control Date | 2019-06-26 |
| Access Control Mode | date |
| Sequence Data Type | illumina-exoncapture |
| access_rights | no restrictions |
| ala_specimen_url | NA |
| ancillary_notes | NA |
| archive_ingestion_date | 2018-06-26 |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/exon_capture/brf/BPAOPS-622/ |
| birth_date | unknown |
| bpa_dataset_id | 102.100.100/52594 |
| bpa_library_id | 102.100.100/53333 |
| bpa_sample_id | 102.100.100/40687 |
| bpa_work_order | 40016 |
| class | Mammalia |
| collection_date | 1984-02-02 |
| collection_method | unknown |
| collector | unknown |
| collector_sample_id | NA |
| common_name | Tasmanian long-eared bat |
| coord_uncertainty_metres | unknown |
| country | Australia |
| custodian | Steve Donnellan |
| data_custodian | Kyle Armstrong |
| data_generated | 2018-06-26 |
| data_type | Illumina FASTQ |
| dataset_url | https://data.bioplatforms.com/dataset/0af9befb-70a8-4db7-8a47-97834be83560/resource/c4c4135a-70f1-451a-b714-70835052d4f5/download/EC_52594_run567_AMacDonald_OzMammals_bat_gDNA.tar |
| date_of_transfer | 2018-06-26 |
| ddrad_data | no |
| ddrad_dataset_ids | NA |
| death_date | unknown |
| description | HiSeq 2500 100bp PE - Bat genomic DNA |
| dna_conc_ng_ul | 3.61 |
| dna_extracted_by | Kyle Armstrong |
| dna_extraction_date | 2015-11-01 |
| dna_extraction_method | QIAGEN Dneasy 96-well plate kit |
| dna_treatment | 12 bioruptor cycles |
| exon_capture_data | yes |
| exon_capture_dataset_ids | 52594.0 |
| experimental_design | Nimblegen Exon Capture - single index - bat V1 |
| facility | brf |
| facility_sample_id | 53333_AHG2NYBCX2_CGTATAT |
| family | Vespertilionidae |
| flowcell_id | AHG2NYBCX2 |
| folder_name | SN877_0567_AMacDonald_OzMammals_bat_gDNA |
| genome_data | no |
| genome_dataset_ids | NA |
| genus | Nyctophilus |
| habitat | unknown |
| identified_by | unknown |
| institution_name | Australian Biological Tissue Collection, South Australian Museum |
| latitude | -43.13 |
| library_comments | Library ng/ul is for region 250-450 bp done on GXII |
| library_location | ANU EBL |
| library_ng_ul | 14.14 |
| library_pcr_cycles | 12.0 |
| library_pcr_reps | 2.0 |
| library_prep_date | 2018-03-12 |
| library_prep_method | Meyer and Kircher protocol |
| library_prepared_by | Kyle Armstrong |
| library_status | Capture completed |
| library_type | exon capture |
| life_stage | adult organism |
| location_text | Fortescue Forest |
| longitude | 147.95 |
| n_libraries_pooled | 96 |
| omg_project | Bat phylogenomics |
| order | Chiroptera |
| p7_library_index_id | 91.0 |
| p7_library_index_sequence | CGTATAT |
| p7_library_oligo_sequence | CAAGCAGAAGACGGCATACGAGATatatacgGTGACTGGAGTTCAGACGTGT |
| phylum | Chordata |
| prior_genetics | unknown |
| sample_quality | good |
| sample_submission_date | 2018-06-26 |
| sequence_length | 100bp PE |
| sequencing_facility | BRF |
| sequencing_platform | Illumina HiSeq 2500 RAPID |
| sex | not determined |
| software_version | unknown |
| source_population | Tasmania |
| species | sherrini |
| species_name | Nyctophilus sherrini |
| state_or_region | Tasmania |
| subspecies_or_variant | NA |
| taxon_id | 59470 |
| taxonomic_group | bat |
| ticket | BPAOPS-622 |
| tissue_collection | Mammal |
| tissue_number | ABTC60850 |
| tissue_preservation | frozen |
| tissue_type | kidney |
| trace_lab | no |
| type_status | unknown |
| voucher_number | AM M.34456 |
| voucher_or_tissue_number | AM M.34456 |
| wild_captive | wild |