Eastern bent-winged bat, Bat phylogenomics, exon capture, liver
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Data and Resources
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Additional Info Show Blank Fields
Field | Value |
---|---|
Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
Access Control Date | 2019-06-26 |
Access Control Mode | date |
Sequence Data Type | illumina-exoncapture |
access_rights | no restrictions |
ala_specimen_url | NA |
ancillary_notes | NA |
archive_ingestion_date | 2018-06-26 |
associated_media | NA |
barcode_id | NA |
base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/exon_capture/brf/BPAOPS-622/ |
birth_date | unknown |
bpa_dataset_id | 102.100.100/52594 |
bpa_library_id | 102.100.100/53335 |
bpa_sample_id | 102.100.100/40689 |
bpa_work_order | 40016 |
class | Mammalia |
collection_date | 1997-04-05 |
collection_method | unknown |
collector | unknown |
collector_sample_id | NA |
common_name | Eastern bent-winged bat |
coord_uncertainty_metres | unknown |
country | Australia |
custodian | Steve Donnellan |
data_custodian | Kyle Armstrong |
data_generated | 2018-06-26 |
data_type | Illumina FASTQ |
dataset_url | https://data.bioplatforms.com/dataset/0af9befb-70a8-4db7-8a47-97834be83560/resource/c4c4135a-70f1-451a-b714-70835052d4f5/download/EC_52594_run567_AMacDonald_OzMammals_bat_gDNA.tar |
date_of_transfer | 2018-06-26 |
ddrad_data | no |
ddrad_dataset_ids | NA |
death_date | unknown |
description | HiSeq 2500 100bp PE - Bat genomic DNA |
dna_conc_ng_ul | 62.73 |
dna_extracted_by | Kyle Armstrong |
dna_extraction_date | 2015-11-01 |
dna_extraction_method | QIAGEN Dneasy 96-well plate kit |
dna_treatment | 11 bioruptor cycles |
exon_capture_data | yes |
exon_capture_dataset_ids | 52594.0 |
experimental_design | Nimblegen Exon Capture - single index - bat V1 |
facility | brf |
facility_sample_id | 53335_AHG2NYBCX2_GACTTCT |
family | Miniopteridae |
flowcell_id | AHG2NYBCX2 |
folder_name | SN877_0567_AMacDonald_OzMammals_bat_gDNA |
genome_data | no |
genome_dataset_ids | NA |
genus | Miniopterus |
habitat | unknown |
identified_by | unknown |
institution_name | Australian Biological Tissue Collection, South Australian Museum |
latitude | -26.75 |
library_comments | Library ng/ul is for region 250-450 bp done on GXII |
library_location | ANU EBL |
library_ng_ul | 11.79 |
library_pcr_cycles | 12.0 |
library_pcr_reps | 2.0 |
library_prep_date | 2018-03-12 |
library_prep_method | Meyer and Kircher protocol |
library_prepared_by | Kyle Armstrong |
library_status | Capture completed |
library_type | exon capture |
life_stage | adult organism |
location_text | Conondale Ranges |
longitude | 152.62 |
n_libraries_pooled | 96 |
omg_project | Bat phylogenomics |
order | Chiroptera |
p7_library_index_id | 93.0 |
p7_library_index_sequence | GACTTCT |
p7_library_oligo_sequence | CAAGCAGAAGACGGCATACGAGATagaagtcGTGACTGGAGTTCAGACGTGT |
phylum | Chordata |
prior_genetics | unknown |
sample_quality | good |
sample_submission_date | 2018-06-26 |
sequence_length | 100bp PE |
sequencing_facility | BRF |
sequencing_platform | Illumina HiSeq 2500 RAPID |
sex | not determined |
software_version | unknown |
source_population | Queensland |
species | orianae |
species_name | Miniopterus orianae |
state_or_region | Queensland |
subspecies_or_variant | oceanensis |
taxon_id | 117603 |
taxonomic_group | bat |
ticket | BPAOPS-622 |
tissue_collection | Mammal |
tissue_number | ABTC13536 |
tissue_preservation | frozen |
tissue_type | liver |
trace_lab | no |
type_status | unknown |
voucher_number | QM JM12015 |
voucher_or_tissue_number | QM JM12015 |
wild_captive | wild |