Common planigale, Phylogenomics, exon capture, liver
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Data and Resources
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
| Access Control Date | 2019-06-04 |
| Access Control Mode | date |
| Sequence Data Type | illumina-exoncapture |
| access_rights | no restrictions |
| ala_specimen_url | NA |
| ancillary_notes | Lat/long converted from 28° 38' " S, 153° 37' " E |
| archive_ingestion_date | 2018-06-04 |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/exon_capture/brf/BPAOPS-623/ |
| birth_date | unknown |
| bpa_dataset_id | 102.100.100/52595 |
| bpa_library_id | 102.100.100/53400 |
| bpa_sample_id | 102.100.100/40694 |
| bpa_work_order | 40017 |
| class | Mammalia |
| collection_date | 1996-10-28 |
| collection_method | unknown |
| collector | Ross Goldingay |
| collector_sample_id | J99 |
| common_name | Common planigale |
| coord_uncertainty_metres | unknown |
| country | Australia |
| custodian | Mark Eldridge | Australian Museum |
| data_custodian | Mark Eldridge |
| data_generated | 2018-06-04 |
| data_type | Illumina FASTQ |
| dataset_url | https://data.bioplatforms.com/dataset/c_52595_sn877_0569_amacdonald_ozmammals_marsupials_gdna_capture/resource/278503c3-4ca3-4a28-918b-5632a8781190 |
| date_of_transfer | 2018-06-04 |
| ddrad_data | no |
| ddrad_dataset_ids | NA |
| death_date | unknown |
| description | HiSeq 2500 100bp PE - Marsupial genomic DNA |
| dna_conc_ng_ul | 18.7 |
| dna_extracted_by | Anna MacDonald |
| dna_extraction_date | 2017-05-05 |
| dna_extraction_method | salting out |
| dna_treatment | 10 bioruptor cycles |
| exon_capture_data | yes |
| exon_capture_dataset_ids | 52595.0 |
| experimental_design | Nimblegen Exon Capture - single index - marsupial V2 |
| facility | brf |
| facility_sample_id | 53400_AHGVYGBCX2_GACGGCG |
| family | Dasyuridae |
| flowcell_id | AHGVYGBCX2 |
| folder_name | SN877_0569_AMacDonald_OzMammals_Marsupials_gDNA_capture |
| genome_data | no |
| genome_dataset_ids | NA |
| genus | Planigale |
| habitat | unknown |
| identified_by | unknown |
| institution_name | Australian Museum |
| latitude | -28.63 |
| library_comments | Library ng/ul is for region 250-700 bp done on GXII |
| library_location | ANU EBL |
| library_ng_ul | 18.2367875885 |
| library_pcr_cycles | 12.0 |
| library_pcr_reps | 2.0 |
| library_prep_date | 2018-05-04 |
| library_prep_method | Meyer and Kircher protocol |
| library_prepared_by | Anna MacDonald | Holly Sargent |
| library_status | Capture completed |
| library_type | exon capture |
| life_stage | adult organism |
| location_generalisation | 1km |
| location_text | Byron Bay |
| longitude | 153.62 |
| n_libraries_pooled | 96 |
| omg_project | Phylogenomics |
| order | Dasyuromorphia |
| p7_library_index_id | 62.0 |
| p7_library_index_sequence | GACGGCG |
| p7_library_oligo_sequence | CAAGCAGAAGACGGCATACGAGATcgccgtcGTGACTGGAGTTCAGACGTGT |
| phylum | Chordata |
| prior_genetics | unknown |
| sample_quality | unknown |
| sample_submission_date | 2018-06-04 |
| sequence_length | 100bp PE |
| sequencing_facility | BRF |
| sequencing_platform | Illumina HiSeq 2500 RAPID |
| sex | female |
| software_version | unknown |
| source_population | unknown |
| species | maculata |
| species_name | Planigale maculata |
| state_or_region | New South Wales |
| subspecies_or_variant | clade 5 |
| taxon_id | 9297 |
| taxonomic_group | marsupial |
| ticket | BPAOPS-623 |
| tissue_collection | Mammalogy |
| tissue_number | EBU11476 |
| tissue_preservation | frozen |
| tissue_type | liver |
| trace_lab | no |
| type_status | unknown |
| voucher_number | AM M.35892.001 |
| voucher_or_tissue_number | AM M.35892.001 |
| wild_captive | unknown |