Wongai ningaui, Phylogenomics, exon capture, liver
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
| Access Control Date | 2019-06-04 |
| Access Control Mode | date |
| Sequence Data Type | illumina-exoncapture |
| access_rights | no restrictions |
| ala_specimen_url | NA |
| ancillary_notes | NA |
| archive_ingestion_date | 2018-06-04 |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/exon_capture/brf/BPAOPS-623/ |
| birth_date | unknown |
| bpa_dataset_id | 102.100.100/52595 |
| bpa_library_id | 102.100.100/53434 |
| bpa_sample_id | 102.100.100/40093 |
| bpa_work_order | 40017 |
| class | Mammalia |
| collection_date | 2004-05-01 |
| collection_method | unknown |
| collector | J Foulkes | Sandy Deserts Survey |
| collector_sample_id | NA |
| common_name | Wongai ningaui |
| coord_uncertainty_metres | unknown |
| country | Australia |
| custodian | Steve Donnellan |
| data_custodian | Mark Eldridge |
| data_generated | 2018-06-04 |
| data_type | Illumina FASTQ |
| dataset_url | https://data.bioplatforms.com/dataset/c_52595_sn877_0569_amacdonald_ozmammals_marsupials_gdna_capture/resource/278503c3-4ca3-4a28-918b-5632a8781190 |
| date_of_transfer | 2018-06-04 |
| ddrad_data | no |
| ddrad_dataset_ids | NA |
| death_date | unknown |
| description | HiSeq 2500 100bp PE - Marsupial genomic DNA |
| dna_conc_ng_ul | 357.7 |
| dna_extracted_by | Anna MacDonald |
| dna_extraction_date | 2017-03-07 |
| dna_extraction_method | salting out |
| dna_treatment | 10 bioruptor cycles, , WGA Doplify 0.5ng input |
| exon_capture_data | yes |
| exon_capture_dataset_ids | 40067 | 52584 | 52595 | 52620 |
| experimental_design | Nimblegen Exon Capture - single index - marsupial V2 |
| facility | brf |
| facility_sample_id | 53434_AHGVYGBCX2_CGCAGCC |
| family | Dasyuridae |
| flowcell_id | AHGVYGBCX2 |
| folder_name | SN877_0569_AMacDonald_OzMammals_Marsupials_gDNA_capture |
| genome_data | no |
| genome_dataset_ids | NA |
| genus | Ningaui |
| habitat | unknown |
| identified_by | unknown |
| institution_name | Australian Biological Tissue Collection, South Australian Museum |
| latitude | -29.2639 |
| library_comments | DOPlify 0.5ng, Library ng/ul is for region 250-700 bp done on GXII |
| library_location | ANU EBL |
| library_ng_ul | 10.7558643305 |
| library_pcr_cycles | 12.0 |
| library_pcr_reps | 2.0 |
| library_prep_date | 2018-05-04 |
| library_prep_method | Meyer and Kircher protocol |
| library_prepared_by | Anna MacDonald | Holly Sargent |
| library_status | Capture completed |
| library_type | exon capture |
| life_stage | not determined |
| location_text | Great Victoria Desert, near Oak Valley, 53.3 km WNW, site code WYO00601 |
| longitude | 130.2136 |
| n_libraries_pooled | 96 |
| omg_project | Phylogenomics |
| order | Dasyuromorphia |
| p7_library_index_id | 96.0 |
| p7_library_index_sequence | CGCAGCC |
| p7_library_oligo_sequence | CAAGCAGAAGACGGCATACGAGATggctgcgGTGACTGGAGTTCAGACGTGT |
| phylum | Chordata |
| prior_genetics | unknown |
| sample_quality | unknown |
| sample_submission_date | 2018-06-04 |
| sequence_length | 100bp PE |
| sequencing_facility | BRF |
| sequencing_platform | Illumina HiSeq 2500 RAPID |
| sex | not determined |
| software_version | unknown |
| source_population | unknown |
| species | ridei |
| species_name | Ningaui ridei |
| state_or_region | South Australia |
| subspecies_or_variant | NA |
| taxon_id | 32553 |
| taxonomic_group | marsupial |
| ticket | BPAOPS-623 |
| tissue_collection | Mammal |
| tissue_number | ABTC80663 |
| tissue_preservation | frozen |
| tissue_type | liver |
| trace_lab | no |
| type_status | unknown |
| voucher_number | SAMA M22885 |
| voucher_or_tissue_number | SAMA M22885 |
| wild_captive | wild |