Nabarlek, Phylogenomics, exon capture, fibroblasts
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
| Access Control Date | 2019-06-15 |
| Access Control Mode | date |
| Sequence Data Type | illumina-exoncapture |
| access_rights | no restrictions |
| ala_specimen_url | NA |
| ancillary_notes | NA |
| archive_ingestion_date | 2018-06-15 |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/exon_capture/brf/BPAOPS-624/ |
| birth_date | unknown |
| bpa_dataset_id | 102.100.100/52596 |
| bpa_library_id | 102.100.100/53435 |
| bpa_sample_id | 102.100.100/40726 |
| bpa_work_order | 40019 |
| class | Mammalia |
| collection_date | 1977-12-21 |
| collection_method | unknown |
| collector | Gordon D Sanson | J E Nelson |
| collector_sample_id | S315 | P2 |
| common_name | Nabarlek |
| coord_uncertainty_metres | unknown |
| country | Australia |
| custodian | Mark Eldridge | Australian Museum |
| data_custodian | Mark Eldridge |
| data_generated | 2018-06-15 |
| data_type | Illumina FASTQ |
| dataset_url | https://data.bioplatforms.com/dataset/ec_52596_marsupial_gdna-capture/resource/a81dce0f-0d0a-4667-abdb-bf98ddd6babf |
| date_of_transfer | 2018-06-15 |
| ddrad_data | no |
| ddrad_dataset_ids | NA |
| death_date | unknown |
| description | HiSeq 2500 100bp PE - Marsupial genomic DNA |
| dna_conc_ng_ul | unknown |
| dna_extracted_by | Mark Eldridge | Australian Museum |
| dna_extraction_date | unknown |
| dna_extraction_method | phenol/chloroform |
| dna_treatment | 12 bioruptor cycles |
| exon_capture_data | yes |
| exon_capture_dataset_ids | 52596 |
| experimental_design | Nimblegen Exon Capture - single index - marsupial V2 |
| facility | brf |
| facility_sample_id | 53435_AHGVYVBCX2_TCGCAGG |
| family | Macropodidae |
| file | 53435_AHGVYVBCX2_TCGCAGG_S1_L001_R1_001.fastq.gz | 53435_AHGVYVBCX2_TCGCAGG_S1_L001_R2_001.fastq.gz | 53435_AHGVYVBCX2_TCGCAGG_S1_L002_R1_001.fastq.gz | 53435_AHGVYVBCX2_TCGCAGG_S1_L002_R2_001.fastq.gz |
| flowcell_id | AHGVYVBCX2 |
| folder_name | SN877_0572_AMacDonald_OzMammals_Marsupials_gDNA_capture |
| genome_data | no |
| genome_dataset_ids | NA |
| genus | Petrogale |
| habitat | unknown |
| identified_by | Gordon D Sanson | J E Nelson |
| institution_name | Australian Museum |
| latitude | -12.05 |
| library_location | ANU EBL |
| library_ng_ul | 255.47 |
| library_pcr_cycles | 12.0 |
| library_pcr_reps | 2.0 |
| library_prep_date | 2015-02-02 |
| library_prep_method | Meyer and Kircher protocol |
| library_prepared_by | Sally Potter |
| library_status | Capture completed |
| library_type | exon capture |
| life_stage | not determined |
| location_text | Mount Borrodaile |
| longitude | 132.9 |
| n_libraries_pooled | 96 |
| omg_project | Phylogenomics |
| order | Diprotodontia |
| p7_library_index_id | 01 |
| p7_library_index_sequence | TCGCAGG |
| p7_library_oligo_sequence | CAAGCAGAAGACGGCATACGAGATcctgcgaGTGACTGGAGTTCAGACGTGT |
| phylum | Chordata |
| prior_genetics | CO1| ND2| Cytb| omega globin | BRCA1 | anonymous nuclear loci | exon capture |
| sample_quality | unknown |
| sample_submission_date | 2018-06-15 |
| sequence_length | 100bp PE |
| sequencing_facility | BRF |
| sequencing_platform | Illumina HiSeq 2500 RAPID |
| sex | female |
| software_version | unknown |
| source_population | unknown |
| species | concinna |
| species_name | Petrogale concinna |
| state_or_region | Northern Territory |
| subspecies_or_variant | canescens |
| taxon_id | 1936090 |
| taxonomic_group | marsupial |
| ticket | BPAOPS-624 |
| tissue_collection | EBU |
| tissue_number | EBU35578 |
| tissue_preservation | frozen |
| tissue_type | fibroblasts |
| trace_lab | no |
| type_status | unknown |
| voucher_number | AM M.43302.001 |
| voucher_or_tissue_number | AM M.43302.001 |
| wild_captive | wild |