Christmas Island Flying-fox, Christmas Island flying-fox conservation genomics, exon capture, skin
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
| Access Control Date | 2020-08-13 |
| Access Control Mode | date |
| Sequence Data Type | illumina-exoncapture |
| access_rights | no restrictions |
| ala_specimen_url | NA |
| ancillary_notes | No voucher but identification unambiguous |
| archive_ingestion_date | 2019-08-14 |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/exon_capture/brf/BPAOPS-840/ |
| birth_date | unknown |
| bpa_dataset_id | 102.100.100/52616 |
| bpa_library_id | 102.100.100/54340 |
| bpa_sample_id | 102.100.100/41630 |
| bpa_work_order | 40050 |
| class | Mammalia |
| collection_date | 2016-01-01 |
| collection_method | netting |
| collector | Christopher Todd |
| collector_sample_id | 062-66940 |
| common_name | Christmas Island Flying-fox |
| coord_uncertainty_metres | unknown |
| country | Australia |
| custodian | Justin Welbergen | Christopher Todd |
| data_custodian | Kyle Armstrong |
| data_generated | 2019-08-14 |
| data_type | Illumina FASTQ |
| dataset_url | (ingested) |
| date_of_transfer | 2019-08-14 |
| ddrad_data | no |
| ddrad_dataset_ids | NA |
| death_date | unknown |
| description | HiSeq 2500 100bp PE - bat exome DNA |
| dna_conc_ng_ul | 0.01 |
| dna_extracted_by | Kyle Armstrong |
| dna_extraction_date | 2018-02-15 |
| dna_extraction_method | QIAGEN Dneasy modified in clean hood |
| dna_treatment | 12 bioruptor cycles |
| exon_capture_data | yes |
| exon_capture_dataset_ids | 52616 |
| experimental_design | Nimblegen Exon Capture - single index - bat V1 |
| facility | brf |
| facility_sample_id | 54340_AH5M7VBCX3_CAATTAC |
| family | Pteropodidae |
| flowcell_id | AH5M7VBCX3 |
| folder_name | SN877_0632_AMacDonald_OzMammals_Bat_gDNA_exome_capture |
| genome_data | no |
| genome_dataset_ids | NA |
| genus | Pteropus |
| habitat | unknown |
| identified_by | Christopher Todd |
| institution_name | Western Sydney University |
| latitude | -10.5 |
| library_comments | Library ng/ul is for region 240-700 bp done on GXII |
| library_location | ANU EBL |
| library_ng_ul | 9.6086528221 |
| library_pcr_cycles | 12.0 |
| library_pcr_reps | 2.0 |
| library_prep_date | 2018-03-12 |
| library_prep_method | Meyer and Kircher protocol |
| library_prepared_by | Kyle Armstrong |
| library_status | Capture completed |
| library_type | exon capture |
| life_stage | adult organism |
| location_text | Christmas Island |
| longitude | 105.6 |
| n_libraries_pooled | 58 |
| omg_project | Christmas Island flying-fox conservation genomics |
| order | Chiroptera |
| p7_library_index_id | 27.0 |
| p7_library_index_sequence | CAATTAC |
| p7_library_oligo_sequence | CAAGCAGAAGACGGCATACGAGATgtaattgGTGACTGGAGTTCAGACGTGT |
| phylum | Chordata |
| prior_genetics | NA |
| sample_quality | good |
| sample_submission_date | 2019-08-14 |
| sequence_length | 100bp PE |
| sequencing_facility | BRF |
| sequencing_platform | Illumina HiSeq 2500 RAPID |
| sex | not determined |
| source_population | Christmas Island |
| species | melanotus |
| species_name | Pteropus melanotus |
| state_or_region | Christmas Island |
| subspecies_or_variant | natalis |
| taxon_id | 1562761 |
| taxonomic_group | bat |
| ticket | BPAOPS-840 |
| tissue_collection | Hawkesbury Institute for the Environment |
| tissue_number | 062-66940 |
| tissue_preservation | dried |
| tissue_type | skin |
| trace_lab | yes |
| type_status | unknown |
| voucher_id | 062-66940 |
| voucher_number | no voucher |
| voucher_or_tissue_number | 062-66940 |
| wild_captive | wild |