Eastern pygmy-possum, Phylogenomics, exon capture, skin
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
| Access Control Date | 2020-08-27 |
| Access Control Mode | date |
| Sequence Data Type | illumina-exoncapture |
| access_rights | unknown |
| ala_specimen_url | NA |
| ancillary_notes | LN01_indexing37 |
| archive_ingestion_date | 2019-08-28 |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/exon_capture/brf/BPAOPS-849/ |
| birth_date | unknown |
| bpa_dataset_id | 102.100.100/52583 |
| bpa_library_id | 102.100.100/54408 |
| bpa_sample_id | 102.100.100/41773 |
| bpa_work_order | NA |
| class | Mammalia |
| collection_date | 2012-11-24 |
| collection_method | mammal trap |
| collector | Kevin C Rowe | Karen Roberts | Museums Victoria |
| collector_sample_id | GRB 472 |
| common_name | Eastern pygmy-possum |
| coord_uncertainty_metres | NA |
| country | Australia |
| custodian | Kevin C Rowe | Museums Victoria |
| data_custodian | Mark Eldridge |
| data_generated | 2019-08-28 |
| data_type | Illumina FASTQ |
| dataset_url | (ingested) |
| date_of_transfer | 2019-08-28 |
| ddrad_data | no |
| ddrad_dataset_ids | NA |
| death_date | unknown |
| description | HiSeq 2500 100bp PE - exon capture marsupial |
| dna_conc_ng_ul | unknown |
| dna_extracted_by | unknown |
| dna_extraction_date | unknown |
| dna_extraction_method | unknown |
| dna_treatment | unknown |
| exon_capture_data | yes |
| exon_capture_dataset_ids | 52583.0 |
| experimental_design | Nimblegen Exon Capture - single index - marsupial V1 |
| facility | brf |
| facility_sample_id | 54408_HH2JNBCXX_CAGGAGG |
| family | Burramyidae |
| file | unknown |
| flowcell_id | HH2JNBCXX |
| folder_name | 52583_60marsupials_fastq |
| genome_data | no |
| genome_dataset_ids | NA |
| genus | Cercartetus |
| habitat | unknown |
| identified_by | Kevin Rowe |
| institution_name | Museums Victoria |
| library_comments | LN01_indexing37 |
| library_location | unknown |
| library_ng_ul | unknown |
| library_pcr_cycles | unknown |
| library_pcr_reps | unknown |
| library_prep_method | Meyer and Kircher protocol |
| library_prepared_by | unknown |
| library_status | Data available |
| library_type | exon capture |
| life_stage | adult organism |
| location_text | Grampians National Park |
| n_libraries_pooled | 56 |
| omg_project | Phylogenomics |
| order | Diprotodontia |
| p7_library_index_id | 37.0 |
| p7_library_index_sequence | CAGGAGG |
| p7_library_oligo_sequence | CAAGCAGAAGACGGCATACGAGATcctcctgGTGACTGGAGTTCAGACGTGT |
| phylum | Chordata |
| prior_genetics | unknown |
| sample_quality | unknown |
| sample_submission_date | 2019-08-28 |
| sequence_length | 100bp PE |
| sequencing_facility | unknown |
| sequencing_platform | Illumina HiSeq 2500 RAPID |
| sex | male |
| software_version | unknown |
| source_population | unknown |
| species | nanus |
| species_name | Cercartetus nanus |
| state_or_region | Victoria |
| subspecies_or_variant | sSydney |
| taxon_id | 190653 |
| taxonomic_group | marsupial |
| ticket | BPAOPS-849 |
| tissue_collection | Mammalogy |
| tissue_number | Z25093 |
| tissue_preservation | dried |
| tissue_type | skin |
| trace_lab | no |
| type_status | unknown |
| voucher_id | MVZ25093 |
| voucher_number | NMV C37130 |
| voucher_or_tissue_number | NMV C37130 |
| wild_captive | wild |