Koala, Phylogenomics, exon capture, ear epithelium
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Data and Resources
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Additional Info Show Blank Fields
Field | Value |
---|---|
Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
Access Control Date | 2020-08-27 |
Access Control Mode | date |
Sequence Data Type | illumina-exoncapture |
access_rights | unknown |
ala_specimen_url | NA |
ancillary_notes | LN02_indexing15 |
archive_ingestion_date | 2019-08-28 |
associated_media | NA |
barcode_id | NA |
base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/exon_capture/brf/BPAOPS-849/ |
birth_date | unknown |
bpa_dataset_id | 102.100.100/52583 |
bpa_library_id | 102.100.100/54429 |
bpa_sample_id | 102.100.100/41794 |
bpa_work_order | NA |
class | Mammalia |
collection_date | 2007-08-11 |
collection_method | unknown |
collector | AMBS |
collector_sample_id | NA |
common_name | Koala |
coord_uncertainty_metres | NA |
country | Australia |
custodian | Mark Eldridge | Australian Museum |
data_custodian | Mark Eldridge |
data_generated | 2019-08-28 |
data_type | Illumina FASTQ |
dataset_url | (ingested) |
date_of_transfer | 2019-08-28 |
ddrad_data | no |
ddrad_dataset_ids | NA |
death_date | unknown |
description | HiSeq 2500 100bp PE - exon capture marsupial |
dna_conc_ng_ul | unknown |
dna_extracted_by | unknown |
dna_extraction_date | unknown |
dna_extraction_method | unknown |
dna_treatment | unknown |
exon_capture_data | yes |
exon_capture_dataset_ids | 52583.0 |
experimental_design | Nimblegen Exon Capture - single index - marsupial V3 |
facility | brf |
facility_sample_id | 54429_HHJGMBCXX_CGACCTG |
family | Phascolarctidae |
file | unknown |
flowcell_id | HHJGMBCXX |
folder_name | 52583_60marsupials_fastq |
genome_data | no |
genome_dataset_ids | NA |
genus | Phascolarctos |
habitat | unknown |
identified_by | unknown |
institution_name | Australian Museum |
library_comments | LN02_indexing15 |
library_location | unknown |
library_ng_ul | unknown |
library_pcr_cycles | unknown |
library_pcr_reps | unknown |
library_prep_method | Meyer and Kircher protocol |
library_prepared_by | unknown |
library_status | Data available |
library_type | exon capture |
life_stage | not determined |
location_text | Pine Creek State Forest |
n_libraries_pooled | 56 |
omg_project | Phylogenomics |
order | Diprotodontia |
p7_library_index_id | 15.0 |
p7_library_index_sequence | CGACCTG |
p7_library_oligo_sequence | CAAGCAGAAGACGGCATACGAGATcaggtcgGTGACTGGAGTTCAGACGTGT |
phylum | Chordata |
prior_genetics | unknown |
sample_quality | unknown |
sample_submission_date | 2019-08-28 |
sequence_length | 100bp PE |
sequencing_facility | unknown |
sequencing_platform | Illumina HiSeq 2500 RAPID |
sex | not determined |
software_version | unknown |
source_population | unknown |
species | cinereus |
species_name | Phascolarctos cinereus |
state_or_region | New South Wales |
subspecies_or_variant | NA |
taxon_id | 38626 |
taxonomic_group | marsupial |
ticket | BPAOPS-849 |
tissue_collection | Mammalogy |
tissue_number | PC24 |
tissue_preservation | unknown |
tissue_type | ear epithelium |
trace_lab | no |
type_status | unknown |
voucher_id | AM.44979 |
voucher_number | AM M.44979 |
voucher_or_tissue_number | AM M.44979 |
wild_captive | unknown |