Squirrel glider, Taxonomy, exon capture, unknown
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Additional Info Show Blank Fields
Field | Value |
---|---|
Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
Access Control Date | 2021-09-17 |
Access Control Mode | date |
Sequence Data Type | illumina-exoncapture |
access_rights | no restrictions |
ala_specimen_url | NA |
ancillary_notes | NA |
archive_ingestion_date | 2020-09-17 |
associated_media | NA |
barcode_id | NA |
base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/exon_capture/brf/BPAOPS-957/A00548_0115_AMacDonald_52633_Marsupial_gDNA/ |
birth_date | unknown |
bpa_dataset_id | 102.100.100/52633 |
bpa_library_id | 102.100.100/56273 |
bpa_sample_id | 102.100.100/360787 |
bpa_work_order | 40069 |
class | Mammalia |
collection_date | unknown |
collection_method | unknown |
collector | unknown |
collector_sample_id | NA |
common_name | Squirrel glider |
coord_uncertainty_metres | unknown |
country | Australia |
custodian | Steve Cooper |
data_custodian | Steve Cooper |
data_generated | 2020-09-17 |
data_type | Illumina FASTQ |
dataset_url | (ingested) |
date_of_transfer | 2020-09-17 |
ddrad_data | no |
ddrad_dataset_ids | NA |
death_date | unknown |
description | Novaseq 6000 Marsupial gDNA capture 52629, 52630, 52633 |
dna_conc_ng_ul | 8.0 |
dna_extracted_by | Tessa Bradfield |
dna_extraction_date | unknown |
dna_extraction_method | unknown |
dna_treatment | 12 biorupter cycles |
exon_capture_data | yes |
exon_capture_dataset_ids | 52633.0 |
experimental_design | Nimblegen Exon Capture, marsupial probes V2, dual indexed |
facility | brf |
facility_sample_id | 56273_HTL5KDRXX_GCATTGG |
family | Petauridae |
flowcell_id | HTL5KDRXX |
folder_name | A00548_115_AMacDonald_52629_52630_52633_Marsupial_gDNA |
genome_data | no |
genome_dataset_ids | NA |
genus | Petaurus |
habitat | unknown |
identified_by | unknown |
institution_name | Australian Biological Tissue Collection, South Australian Museum |
latitude | -36.31 |
library_comments | library ng/µL for 200-1000 bp range |
library_location | ANU EBL |
library_ng_ul | 81.9502047201 |
library_pcr_cycles | 12.0 |
library_pcr_reps | 2.0 |
library_prep_date | 2020-08-31 |
library_prep_method | Meyer and Kircher protocol |
library_prepared_by | Anna MacDonald | Liz Broady |
library_status | Submitted for sequencing |
library_type | exon capture |
life_stage | not determined |
location_text | Nandina |
longitude | 140.77 |
n_libraries_pooled | 288 |
omg_project | Taxonomy |
order | Diprotodontia |
p5_library_index_id | 17.0 |
p5_library_index_sequence | AGGTACC |
p5_library_oligo_sequence | AATGATACGGCGACCACCGAGATCTACACggtacctACACTCTTTCCCTACACGACGCTCTT |
p7_library_index_id | 22.0 |
p7_library_index_sequence | GCATTGG |
p7_library_oligo_sequence | CAAGCAGAAGACGGCATACGAGATccaatgcGTGACTGGAGTTCAGACGTGT |
phylum | Chordata |
prior_genetics | vWF |
sample_quality | unknown |
sample_submission_date | 2020-09-17 |
sequence_length | 100bp PE |
sequencing_facility | BRF |
sequencing_platform | Illumina NovaSeq SP 200 cycle |
sex | not determined |
software_version | unknown |
source_population | unknown |
species | norfolcensis |
species_name | Petaurus norfolcensis |
state_or_region | South Australia |
subspecies_or_variant | NA |
taxon_id | 122272 |
taxonomic_group | marsupial |
ticket | BPAOPS-957 |
tissue_collection | Mammal |
tissue_number | ABTC27085 |
tissue_preservation | unknown |
tissue_type | unknown |
trace_lab | no |
type_status | unknown |
voucher_number | SAMA M17406 |
voucher_or_tissue_number | SAMA M17406 |
wild_captive | wild |