Shark Bay mouse, Conservation Genomics, ddRAD_AGRF, ear epithelium
Dataset size is: 21.96 KiB
Data and Resources
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52611_H237FBGXC_CTTGTA_L004_R1.fastq.gz Metadata Only FASTQ
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52611_H237FBGXC_GCCAAT_L004_R1.fastq.gz Metadata Only FASTQ
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52611_H237FBGXC_GCCAAT_L001_R1.fastq.gz Metadata Only FASTQ
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52611_H237FBGXC_CTTGTA_L002_R1.fastq.gz Metadata Only FASTQ
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52611_H237FBGXC_GCCAAT_L002_R1.fastq.gz Metadata Only FASTQ
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52611_H237FBGXC_GCCAAT_L003_R1.fastq.gz Metadata Only FASTQ
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52611_H237FBGXC_CTTGTA_L003_R1.fastq.gz Metadata Only FASTQ
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52611_H237FBGXC_CTTGTA_L001_R1.fastq.gz Metadata Only FASTQ
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OMG_NGS_AGRF_H237FBGXC_metadata.xlsx Metadata Only XLSX
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
| Access Control Date | 2020-08-27 |
| Access Control Mode | date |
| Sequence Data Type | illumina-ddrad |
| access_rights | location information restricted |
| ala_specimen_url | NA |
| archive_ingestion_date | 2019-08-29 |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/ddrad/BPAOPS-851/ |
| birth_date | unknown |
| bpa_dataset_id | 102.100.100/52611 |
| class | Mammalia |
| collection_method | unknown |
| common_name | Shark Bay mouse |
| coord_uncertainty_metres | NA |
| country | Australia |
| custodian | Kym Ottewell | DBCA |
| data_generated | 2019-08-29 |
| data_type | Illumina FASTQ |
| dataset_url | https://data.bioplatforms.com/dataset/bpa-omg-genomics-ddrad-102_100_100_52611-h237fbgxc |
| date_of_transfer | 2019-08-28 |
| ddrad_data | yes |
| ddrad_dataset_ids | 52611 |
| death_date | unknown |
| description | NextSeq ddRAD- data set ID 52611 |
| exon_capture_data | no |
| exon_capture_dataset_ids | NA |
| experimental_design | PstI and MseI |
| family | Muridae |
| flowcell_id | H237FBGXC |
| folder_name | AGRF_OMG_52611_H237FBGXC |
| genome_data | no |
| genome_dataset_ids | NA |
| genus | Pseudomys |
| habitat | unknown |
| identified_by | unknown |
| institution_name | Department of Biodiversity, Conservation and Attractions |
| library_location | AGRF Melbourne |
| library_pcr_cycles | 11.0 |
| library_pcr_reps | 7.0 |
| library_prep_date | 2019-07-31 |
| library_prep_method | ddRAD (based on Peterson et al 2012) |
| library_prepared_by | Jade Cooke |
| library_status | Data available |
| library_type | ddRAD_AGRF |
| n_libraries_pooled | 2 |
| omg_project | Conservation Genomics |
| order | Rodentia |
| phylum | Chordata |
| plate_name | SharkBayMouseP1 |
| prior_genetics | unknown |
| sample_quality | unknown |
| sample_submission_date | 2019-08-28 |
| sequence_length | 150bp SE High-Output |
| sequencing_facility | AGRF Melbourne |
| sequencing_platform | illumina NextSeq 500 |
| species | fieldi |
| state_or_region | Western Australia |
| subspecies_or_variant | NA |
| taxon_id | 442608 |
| taxonomic_group | rodent |
| ticket | BPAOPS-851 |
| tissue_collection | Mammal |
| tissue_preservation | ethanol |
| tissue_type | ear epithelium |
| trace_lab | no |
| type_status | unknown |
| voucher_number | no voucher |