Black-footed rock-wallaby, Conservation, exon capture, DNA
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Data and Resources
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
| Access Control Date | 2021-09-23 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| access_rights | location information restricted |
| ala_specimen_url | NA |
| ancillary_notes | NA |
| archive_ingestion_date | 2020-09-23 |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/whole_genome/brf/BPAOPS-958/A00548_114_AMacDonald_52634_Black_footed_rock_wallaby_gDNA/ |
| birth_date | unknown |
| bpa_dataset_id | 102.100.100/52634 |
| bpa_library_id | 102.100.100/56018 |
| bpa_sample_id | 102.100.100/360630 |
| bpa_work_order | 40068 |
| class | Mammalia |
| collection_date | 1998 |
| collection_method | cage trap |
| collector | David Taggart |
| collector_sample_id | Scruffy |
| common_name | Black-footed rock-wallaby |
| coord_uncertainty_metres | NA |
| country | Australia |
| custodian | Mark Eldridge | Australian Museum |
| data_custodian | Sally Potter | Mark Eldridge |
| data_generated | 2020-09-23 |
| data_type | Illumina FASTQ |
| date_of_transfer | 2020-09-23 |
| ddrad_data | no |
| ddrad_dataset_ids | NA |
| death_date | unknown |
| description | Novaseq 6000 WGS Blackfooted rock wallaby 52634 |
| dna_conc_ng_ul | 137.2 |
| dna_extracted_by | Michelle Jones |
| dna_extraction_date | unknown |
| dna_extraction_method | high salt |
| exon_capture_data | yes |
| exon_capture_dataset_ids | 52631.0 |
| experimental_design | Whole genome resequencing: DNA sheared, adapters ligated, dual indexed |
| facility | brf |
| facility_sample_id | 56018_HVC7KDMXX_AGCAGGT |
| family | Macropodidae |
| flowcell_id | HVC7KDMXX |
| folder_name | A00548_114_AMacDonald_52634_Black_footed_rock_wallaby_gDNA |
| genome_data | yes |
| genome_dataset_ids | 52634.0 |
| genus | Petrogale |
| habitat | unknown |
| identified_by | unknown |
| institution_name | Australian Museum |
| library_comments | library ng/µL for 200-1000 bp range |
| library_location | ANU EBL |
| library_ng_ul | 16.1765444149 |
| library_pcr_cycles | 12 |
| library_pcr_reps | 2.0 |
| library_prep_date | 2020-08-31 |
| library_prep_method | Meyer and Kircher protocol |
| library_prepared_by | Anna MacDonald |
| library_status | Submitted for sequencing |
| library_type | exon capture |
| life_stage | adult organism |
| location_text | Melbourne Zoo |
| n_libraries_pooled | 50 |
| omg_project | Conservation |
| order | Diprotodontia |
| p5_library_index_id | 02 |
| p5_library_index_sequence | CTCTGCA |
| p5_library_oligo_sequence | AATGATACGGCGACCACCGAGATCTACACtgcagagACACTCTTTCCCTACACGACGCTCTT |
| p7_library_index_id | 45.0 |
| p7_library_index_sequence | AGCAGGT |
| p7_library_oligo_sequence | CAAGCAGAAGACGGCATACGAGATacctgctGTGACTGGAGTTCAGACGTGT |
| phylum | Chordata |
| prior_genetics | unknown |
| sample_quality | good |
| sample_submission_date | 2020-09-23 |
| sequence_length | 150bp PE |
| sequencing_facility | BRF |
| sequencing_platform | Illumina NovaSeq S2 300 cycle |
| sex | male |
| software_version | unknown |
| source_population | Arltunga, NT |
| species | lateralis |
| state_or_region | Victoria |
| subspecies_or_variant | centralis |
| taxon_id | 54085 |
| taxonomic_group | marsupial |
| ticket | BPAOPS-958 |
| tissue_collection | unknown |
| tissue_number | S2986 |
| tissue_preservation | frozen |
| tissue_type | DNA |
| trace_lab | no |
| type_status | unknown |
| voucher_number | no voucher |
| voucher_or_tissue_number | S2986 |
| wild_captive | captive |