OMG Pacbio Genome Assembly 102.100.100/53816 Flye 2.7
Dataset size is: 2.69 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
| Access Control Date | 2021-08-07 |
| Access Control Mode | date |
| Sequence Data Type | genome-assembly |
| analysis_aim | Genome assembly |
| archive_ingestion_date | 2020-08-19 |
| assembly_date | 2019 |
| assembly_method | Flye |
| assembly_method_version_or_date | Flye 2.7 |
| assembly_name | Flye_1 |
| bacteria_available_from | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/pacbio-secondary/BPAOPS-000/ |
| bpa_dataset_id | 102.100.100/52597 |
| bpa_library_id | 102.100.100/53816 |
| bpa_sample_id | 102.100.100/40065 |
| computational_infrastructure | Unknown |
| contact_person | Stephen Frankenberg |
| date_of_transfer | 2020-08-07 |
| description | PacBio genome assemblies derived data |
| folder_name | Scras_dunnart_assem1 |
| full_or_partial_genome_in_the_sample | Yes, Full |
| genome_coverage | 46.1 |
| genus | Sminthopsis |
| hybrid | No |
| main_analysis_output | Scaffold |
| n50 | 10.0 |
| no_scaffolds | Unknown |
| polishing_scaffolding_data | ONT, Illumina |
| polishing_scaffolding_method | Redundans, Pilon |
| raw_resources | {'40065_m54196_190406_182351.subreads.bam': {'bpa_sample_id': u'40065', 'run_date': u'190406'}, '40065_m54196_190412_202629.subreads.bam': {'bpa_sample_id': u'40065', 'run_date': u'190412'}, '40065_m54196_190401_034953.subreads.bam': {'package_id': u'bpa-omg-pacbio-102_100_100_53816-20190401', 'bpa_sample_id': u'40065', 'run_date': u'190401'}, '40065_m54196_190411_134552.subreads.bam': {'package_id': u'bpa-omg-pacbio-102_100_100_53816-20190411', 'bpa_sample_id': u'40065', 'run_date': u'190411'}, '40065_m54196_190403_170954.subreads.bam': {'bpa_sample_id': u'40065', 'run_date': u'190403'}, '40065_m54196_190321_023510.subreads.bam': {'package_id': u'bpa-omg-pacbio-102_100_100_53816-20190321', 'bpa_sample_id': u'40065', 'run_date': u'190321'}, '40065_m54196_190402_103015.subreads.bam': {'bpa_sample_id': u'40065', 'run_date': u'190402'}, '40065_m54196_190413_165354.subreads.bam': {'bpa_sample_id': u'40065', 'run_date': u'190413'}, '40065_m54196_190321_124859.subreads.bam': {'package_id': u'bpa-omg-pacbio-102_100_100_53816-20190321', 'bpa_sample_id': u'40065', 'run_date': u'190321'}, '40065_m54196_190414_030733.subreads.bam': {'bpa_sample_id': u'40065', 'run_date': u'190414'}, '40065_m54196_190406_081029.subreads.bam': {'bpa_sample_id': u'40065', 'run_date': u'190406'}, '40065_m54196_190404_032311.subreads.bam': {'bpa_sample_id': u'40065', 'run_date': u'190404'}, '40065_m54196_190413_064005.subreads.bam': {'bpa_sample_id': u'40065', 'run_date': u'190413'}, '40065_m54196_190405_012953.subreads.bam': {'package_id': u'bpa-omg-pacbio-102_100_100_53816-20190405', 'bpa_sample_id': u'40065', 'run_date': u'190405'}, '40065_m54196_190411_033210.subreads.bam': {'package_id': u'bpa-omg-pacbio-102_100_100_53816-20190411', 'bpa_sample_id': u'40065', 'run_date': u'190411'}, '40065_m54196_190411_235922.subreads.bam': {'package_id': u'bpa-omg-pacbio-102_100_100_53816-20190411', 'bpa_sample_id': u'40065', 'run_date': u'190411'}, '40065_m54196_190403_065639.subreads.bam': {'bpa_sample_id': u'40065', 'run_date': u'190403'}, '40065_m54196_190402_204323.subreads.bam': {'bpa_sample_id': u'40065', 'run_date': u'190402'}, '40065_m54196_190412_101255.subreads.bam': {'bpa_sample_id': u'40065', 'run_date': u'190412'}, '40065_m54196_190401_140334.subreads.bam': {'package_id': u'bpa-omg-pacbio-102_100_100_53816-20190401', 'bpa_sample_id': u'40065', 'run_date': u'190401'}, '40065_m54196_190321_230255.subreads.bam': {'package_id': u'bpa-omg-pacbio-102_100_100_53816-20190321', 'bpa_sample_id': u'40065', 'run_date': u'190321'}, '40065_m54196_190405_215658.subreads.bam': {'package_id': u'bpa-omg-pacbio-102_100_100_53816-20190405', 'bpa_sample_id': u'40065', 'run_date': u'190405'}, '40065_m54196_190405_114326.subreads.bam': {'package_id': u'bpa-omg-pacbio-102_100_100_53816-20190405', 'bpa_sample_id': u'40065', 'run_date': u'190405'}, '40065_m54196_190402_001659.subreads.bam': {'bpa_sample_id': u'40065', 'run_date': u'190402'}, '40065_m54196_190407_043718.subreads.bam': {'bpa_sample_id': u'40065', 'run_date': u'190407'}} |
| reference_genome | NA |
| sample_submission_date | 2020-08-07 |
| seq_technology | PacBio |
| sequencing_technology | PacBio Sequel |
| species | crassicaudata |
| ticket | BPAOPS-000 |
| update |