Plant Pathogen, Genomics, Illumina Shortread, Sample ID 394567
Dataset size is: 0.00 Bit
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:pp-prj001 |
| Access Control Date | 2024-02-28 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| analysis_software | NovaSeq Control Software (NCS) v1.7.5; Real Time Analysis (RTA) v3.4.4; BCL Convert 07.021.645.4.0.3 |
| ancillary_notes | Mature flowering plant |
| associated_media | Photos available |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/pp_staging/illumina-shortread/BPAOPS-1362/20230301_PP_AGRF_H3TLVDRX3/ |
| bioplatforms_dataset_id | 102.100.100/399015 |
| bioplatforms_library_id | 102.100.100/396817 |
| bioplatforms_project | Plant Pathogen Initiative |
| bioplatforms_project_code | PP001_Legumevirus |
| bioplatforms_sample_id | 102.100.100/394567 |
| ccg_jira_ticket | BPAOPS-1362 |
| collection_date | 2014-11-13 |
| collection_method | Field collection based on visual inspection of symptomatic plants |
| collection_permit | IP13007705 |
| collector | Andrew Geering, John Thomas |
| collector_sample_id | JT519 |
| coord_uncertainty_metres | 5.0 |
| country | Norfolk Island |
| data_context | Genomics |
| data_type | Illumina short read |
| date_data_published | 03/03/2023 |
| date_of_transfer | 2023-02-28 |
| date_of_transfer_to_archive | 2023-03-01 |
| description | Illumina short read |
| download | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1362 |
| facility | AGRF |
| facility_project_code | CAGRF221012498 |
| facility_sample_id | 13587-20 |
| flowcell_id | H3TLVDRX3 |
| flowcell_type | SP-300 |
| folder_name | 20230301_PP_AGRF_H3TLVDRX3 |
| host_common_name | French bean |
| host_family | Fabaceae |
| host_organ | Leaf |
| host_scientific_name | Phaseolus vulgaris |
| host_status | Cultivated |
| host_symptom | Chlorosis of lower leaves |
| insert_size_range | 250 bp |
| library_construction_protocol | TruSeq Stranded Total RNA with Ribo-Zero Plant |
| library_id | 396817 |
| library_index_id_dual | UDI0076-F & UDI0076-R |
| library_index_seq_dual | GACGTCTT-GGTGAACC |
| library_layout | Paired-End |
| library_location | AGRF Melbourne |
| library_ng_ul | 25.0 |
| library_pcr_cycles | 15 |
| library_prep_date | 2023-02-20 |
| library_prepared_by | Michael Burch |
| library_selection | Stranded RNA with rRNA Depletion |
| library_source | Plant RNA |
| library_strategy | Whole Transcriptome Sequencing |
| library_type | Illumina-shortread |
| life_stage | Mature plant |
| location_info_restricted | Yes |
| location_text | Bullocks Hut Road |
| material_extracted_by | John Thomas, Nga Tran |
| material_extraction_date | 2022-08-30 |
| material_extraction_method | TRIzol Plus RNA purification kit |
| material_extraction_type | RNA |
| metadata_revision_date | 2024-01-16 |
| metadata_revision_filename | 2024-01-16_Combined_Plant_Pathogen_sample_metadata_forQCIF_removelatlong_v2.xlsx |
| project_lead | John Thomas | QAAFI |
| sample_collection_type | Herbarium |
| sample_custodian | Paul Campbell (QDAF) | John Thomas (QAAFI) |
| sample_quality | Good |
| sample_type | Dried leaf tissue from a single plant |
| scientific_name | Unknown virus (Dried leaf tissue from a single plant) |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | V1.5 |
| sequencing_model | 6000.0 |
| sequencing_platform | NovaSeq |
| specimen_custodian | QDAF Plant Virus Collection |
| specimen_id | Q6302 |
| specimen_id_description | QDAF Plant Virus Collection |
| taxonomic_group | Virus |
| ticket | BPAOPS-1362 |
| tissue | Leaf |
| tissue_preservation | Dried over silca gel |
| tissue_preservation_temperature | -20°C |
| wild_captive | Cultivated |
| work_order | 20003 |