Plant Pathogen, Genomics, Illumina Shortread, Sample ID 394878
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:pp-prj011 |
| Access Control Date | 2024-12-20 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| analysis_software | NovaSeq X Control Software; Real Time Analysis; Dragen BCL Convert |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/pp_staging/illumina-shortread/BPAOPS-1549/20231221_PP_AGRF_CAGRFCAGRF230313884_22HCNKLT3/ |
| bioplatforms_dataset_id | 102.100.100/399024 |
| bioplatforms_library_id | 102.100.100/397132 |
| bioplatforms_project | Plant Pathogen Initiative |
| bioplatforms_project_code | PP011_Rals_QDAF |
| bioplatforms_sample_id | 102.100.100/394878 |
| ccg_jira_ticket | BPAOPS-1549 |
| class | Betaproteobacteria |
| collection_date | 1991-04-17 |
| collector | Pathania, N. |
| country | Australia |
| data_context | Genomics |
| data_type | Illumina short read |
| date_data_published | 03/01/2024 |
| date_of_transfer | 2023-12-21 |
| date_of_transfer_to_archive | 2024-01-02 |
| description | Illumina short read |
| download | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1549 |
| experimental_design | v1.2.0.28691; v4.6.7; v07.021.645.4.0.3 |
| facility | AGRF |
| facility_project_code | CAGRF230313884 |
| facility_sample_id | 14874-21 |
| family | Burkholderiaceae |
| fast5_compression | fastq.gz |
| flowcell_id | 22HCNKLT3 |
| flowcell_type | 10B-300 |
| folder_name | 20231221_PP_AGRF_CAGRFCAGRF230313884_22HCNKLT3 (Partial 39 samples) |
| genus | Ralstonia |
| host_common_name | Tomato |
| host_family | Solanaceae |
| host_organ | Stem and branch |
| host_scientific_name | Solanum lycopersicum |
| insert_size_range | 350 bp ± 100 bp |
| library_construction_protocol | Illumina DNA Prep M |
| library_id | 397132 |
| library_index_id_dual | UDP0016-F & UDP0016-R |
| library_index_seq_dual | CGGTTACGGC-AAGACTATAG |
| library_layout | Paired-End |
| library_location | AGRF Melbourne |
| library_ng_ul | 6.98 |
| library_pcr_cycles | 5 |
| library_prep_date | 2023-11-03 |
| library_prepared_by | EB |
| library_strategy | WGS |
| library_type | WGS |
| location_text | Bundaberg |
| material_extracted_by | Nandita Pathania/ MRS |
| material_extraction_date | 2022-09-26 |
| material_extraction_method | Bioline isolate II Genomic DNA kit |
| material_extraction_type | gDNA |
| metadata_revision_date | 2024-01-16 |
| metadata_revision_filename | 2024-01-16_Combined_Plant_Pathogen_sample_metadata_forQCIF_removelatlong_v2.xlsx |
| order | Burkholderiales |
| phylum | Pseudomonadota |
| project_lead | Paul Campbell | QDAF |
| sample_collection_type | Collection |
| sample_custodian | Nandita Pathania / QDAF |
| sample_type | DNA |
| scientific_name | Ralstonia pseudosolanacearum |
| scientific_name_authorship | Safni et al. 2014 |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | XLEAP-SBS |
| sequencing_model | NovaSeq X Plus |
| sequencing_platform | Illumina |
| species | pseudosolanacearum |
| specimen_custodian | Mareeba Research Station |
| specimen_id | M 5818 |
| specimen_id_description | Mareeba Collection |
| state_or_region | Queensland |
| taxon_id | 1310165 |
| taxonomic_group | Bacteria |
| ticket | BPAOPS-1549 |
| work_order | WO20012 |